Variant report

Variant	rs6023149
Chromosome Location	chr20:52974556-52974557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1321466	0.86[EUR][1000 genomes]
rs1321467	0.86[EUR][1000 genomes]
rs1812372	0.86[EUR][1000 genomes]
rs28578506	1.00[EUR][1000 genomes]
rs28662069	0.86[EUR][1000 genomes]
rs6014000	0.86[EUR][1000 genomes]
rs6014001	0.86[EUR][1000 genomes]
rs6014002	0.86[EUR][1000 genomes]
rs6014008	0.86[EUR][1000 genomes]
rs6014009	0.86[EUR][1000 genomes]
rs6014010	0.86[EUR][1000 genomes]
rs6014012	0.86[EUR][1000 genomes]
rs6023150	0.86[EUR][1000 genomes]
rs6023190	0.86[EUR][1000 genomes]
rs6023194	0.86[EUR][1000 genomes]
rs6023195	0.86[EUR][1000 genomes]
rs6023196	0.86[EUR][1000 genomes]
rs6023204	0.86[EUR][1000 genomes]
rs6023206	0.86[EUR][1000 genomes]
rs6023208	0.86[EUR][1000 genomes]
rs6023209	0.86[EUR][1000 genomes]
rs6023212	0.86[EUR][1000 genomes]
rs6023219	0.86[EUR][1000 genomes]
rs6023222	0.86[EUR][1000 genomes]
rs6023223	0.86[EUR][1000 genomes]
rs6023224	0.86[EUR][1000 genomes]
rs6023225	0.86[EUR][1000 genomes]
rs6023226	0.86[EUR][1000 genomes]
rs6091866	0.86[EUR][1000 genomes]
rs6091868	0.86[EUR][1000 genomes]
rs6091869	0.86[EUR][1000 genomes]
rs6091870	0.86[EUR][1000 genomes]
rs6091873	0.86[EUR][1000 genomes]
rs6091880	0.86[EUR][1000 genomes]
rs6097956	0.86[EUR][1000 genomes]
rs6097968	0.86[EUR][1000 genomes]
rs6097969	0.86[EUR][1000 genomes]
rs6097970	0.86[EUR][1000 genomes]
rs6097976	0.86[EUR][1000 genomes]
rs6097977	0.86[EUR][1000 genomes]
rs73273209	0.86[EUR][1000 genomes]
rs7343545	0.86[EUR][1000 genomes]
rs8114344	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52972600-52977600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr20:52973600-52975400	Enhancers	Fetal Stomach	stomach
3	chr20:52974000-52977800	Weak transcription	Fetal Brain Female	brain
4	chr20:52974000-52978200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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