Variant report

Variant	rs60243617
Chromosome Location	chr3:150070751-150070752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150070746..150072444-chr3:150088215..150090058,2	MCF-7	breast:
2	chr3:150064573..150066917-chr3:150070283..150073113,2	K562	blood:
3	chr3:150058583..150074355-chr3:150124068..150134356,51	MCF-7	breast:
4	chr3:150059766..150072041-chr3:150122033..150133129,50	MCF-7	breast:
5	chr3:150069354..150071099-chr3:150138722..150140607,2	K562	blood:
6	chr3:150064573..150066847-chr3:150070283..150072225,2	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11924208	0.80[ASN][1000 genomes]
rs11929253	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962345	0.84[ASN][1000 genomes]
rs2167178	0.84[ASN][1000 genomes]
rs2278806	0.84[ASN][1000 genomes]
rs2868426	0.89[ASN][1000 genomes]
rs35405640	0.87[ASN][1000 genomes]
rs59533874	0.82[ASN][1000 genomes]
rs62271370	0.82[ASN][1000 genomes]
rs73163679	0.87[ASN][1000 genomes]
rs73163682	0.87[ASN][1000 genomes]
rs73869224	0.87[ASN][1000 genomes]
rs7633948	0.96[ASN][1000 genomes]
rs7639816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150061800-150071000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:150061800-150071000	Enhancers	HMEC	breast
3	chr3:150065200-150072600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:150065400-150071000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:150065400-150072600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:150065600-150071000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:150065800-150072600	Weak transcription	Left Ventricle	heart
8	chr3:150067000-150071000	Enhancers	NHEK	skin
9	chr3:150067000-150072000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:150067200-150070800	Enhancers	Fetal Heart	heart
11	chr3:150068000-150070800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:150068000-150072600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:150068200-150072400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:150068200-150077400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:150068600-150075800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:150069200-150075800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:150069400-150075200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:150069600-150073200	Weak transcription	HUVEC	blood vessel
19	chr3:150070200-150070800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:150070600-150070800	Enhancers	Muscle Satellite Cultured Cells	--

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