Variant report

Variant	rs7633948
Chromosome Location	chr3:150072153-150072154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150070746..150072444-chr3:150088215..150090058,2	MCF-7	breast:
2	chr3:150064573..150066917-chr3:150070283..150073113,2	K562	blood:
3	chr3:150058583..150074355-chr3:150124068..150134356,51	MCF-7	breast:
4	chr3:150072020..150072758-chr3:150086228..150086770,2	MCF-7	breast:
5	chr3:150068495..150070637-chr3:150070841..150072414,2	K562	blood:
6	chr3:150071761..150072318-chr3:150086669..150087193,3	MCF-7	breast:
7	chr3:150064573..150066847-chr3:150070283..150072225,2	K562	blood:
8	chr3:150071588..150073829-chr3:150454934..150457730,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11924208	0.93[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11929253	0.93[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1962345	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2167178	0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2278806	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2868426	0.89[ASN][1000 genomes]
rs35405640	0.87[ASN][1000 genomes]
rs59533874	0.82[ASN][1000 genomes]
rs60243617	0.96[ASN][1000 genomes]
rs62271370	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73163679	0.87[ASN][1000 genomes]
rs73163682	0.87[ASN][1000 genomes]
rs73869224	0.87[ASN][1000 genomes]
rs7639816	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150065200-150072600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:150065400-150072600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:150065800-150072600	Weak transcription	Left Ventricle	heart
4	chr3:150068000-150072600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:150068200-150072400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:150068200-150077400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:150068600-150075800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:150069200-150075800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:150069400-150075200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:150069600-150073200	Weak transcription	HUVEC	blood vessel
11	chr3:150071000-150079800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:150071000-150080000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:150071000-150080000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:150071000-150080000	Weak transcription	HMEC	breast
15	chr3:150072000-150073200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr3:150072000-150073200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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