Variant report

Variant	rs73163679
Chromosome Location	chr3:150095501-150095502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150095471..150097889-chr3:150125779..150128090,2	MCF-7	breast:
2	chr3:150093390..150097610-chr3:150100766..150105118,7	MCF-7	breast:
3	chr3:150093712..150096521-chr3:150152654..150154725,2	K562	blood:
4	chr3:150094478..150097287-chr3:150107822..150109795,2	MCF-7	breast:
5	chr3:150093950..150095964-chr3:150101199..150103384,2	K562	blood:
6	chr3:150087949..150089476-chr3:150093898..150096286,2	MCF-7	breast:
7	chr3:150086313..150087997-chr3:150093926..150095671,2	MCF-7	breast:
8	chr3:150086519..150091866-chr3:150093461..150097312,5	K562	blood:
9	chr3:150093407..150096094-chr3:150124044..150128007,4	K562	blood:
10	chr3:150093624..150096109-chr3:150142914..150145659,2	K562	blood:
11	chr3:150064599..150068049-chr3:150092339..150097012,5	MCF-7	breast:
12	chr3:150093271..150095858-chr3:150119716..150121921,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11929253	0.89[ASN][1000 genomes]
rs2278806	0.96[ASN][1000 genomes]
rs2868426	0.94[ASN][1000 genomes]
rs35405640	1.00[ASN][1000 genomes]
rs59533874	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60243617	0.87[ASN][1000 genomes]
rs73163682	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73869224	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633948	0.87[ASN][1000 genomes]
rs7639816	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150086200-150102200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150089600-150097400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:150090200-150124600	Weak transcription	Aorta	Aorta
4	chr3:150090800-150096000	Weak transcription	Gastric	stomach
5	chr3:150090800-150096000	Weak transcription	Stomach Mucosa	stomach
6	chr3:150090800-150096200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:150090800-150096600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:150090800-150097400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:150090800-150107000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:150090800-150108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:150090800-150111000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:150090800-150111000	Weak transcription	NHEK	skin
13	chr3:150091800-150101800	Weak transcription	Primary B cells from cord blood	blood
14	chr3:150093200-150100600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:150094600-150095600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr3:150094600-150095800	Weak transcription	A549	lung
17	chr3:150094600-150096000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:150094600-150097600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:150094600-150102400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:150094600-150102600	Weak transcription	Left Ventricle	heart
21	chr3:150094600-150106200	Weak transcription	HSMM	muscle
22	chr3:150094600-150108800	Weak transcription	NHLF	lung
23	chr3:150094800-150095800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:150094800-150095800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:150094800-150096000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr3:150094800-150096000	Weak transcription	Fetal Intestine Small	intestine
27	chr3:150094800-150097000	Weak transcription	Ovary	ovary
28	chr3:150094800-150101800	Weak transcription	K562	blood
29	chr3:150094800-150102200	Weak transcription	Fetal Intestine Large	intestine
30	chr3:150094800-150108200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links