Variant report

Variant	rs7639816
Chromosome Location	chr3:150073703-150073704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11929253	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962345	0.82[ASN][1000 genomes]
rs2167178	0.82[ASN][1000 genomes]
rs2278806	0.85[ASN][1000 genomes]
rs2868426	0.91[ASN][1000 genomes]
rs35405640	0.89[ASN][1000 genomes]
rs59533874	0.84[ASN][1000 genomes]
rs60243617	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62271370	0.80[ASN][1000 genomes]
rs73163679	0.89[ASN][1000 genomes]
rs73163682	0.89[ASN][1000 genomes]
rs73869224	0.89[ASN][1000 genomes]
rs7633948	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150068200-150077400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:150068600-150075800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:150069200-150075800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:150069400-150075200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:150071000-150079800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:150071000-150080000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:150071000-150080000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:150071000-150080000	Weak transcription	HMEC	breast
9	chr3:150072400-150073800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:150073200-150074000	Enhancers	HUVEC	blood vessel
11	chr3:150073200-150075000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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