Variant report
| Variant | rs60277631 |
|---|---|
| Chromosome Location | chr3:160914879-160914880 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000169251 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs12108169 | 0.89[AMR][1000 genomes] |
| rs12374001 | 0.94[AMR][1000 genomes] |
| rs12629152 | 0.94[AMR][1000 genomes] |
| rs12629929 | 0.83[AMR][1000 genomes] |
| rs12630038 | 0.89[AMR][1000 genomes] |
| rs12631467 | 0.83[AMR][1000 genomes] |
| rs12632346 | 0.89[AMR][1000 genomes] |
| rs12633103 | 0.83[AMR][1000 genomes] |
| rs12636434 | 0.83[AMR][1000 genomes] |
| rs12636573 | 0.94[AMR][1000 genomes] |
| rs12636590 | 0.94[AMR][1000 genomes] |
| rs16834031 | 0.83[AMR][1000 genomes] |
| rs1904204 | 0.89[AMR][1000 genomes] |
| rs28853731 | 0.94[AMR][1000 genomes] |
| rs4132373 | 0.94[AMR][1000 genomes] |
| rs55949838 | 0.83[AMR][1000 genomes] |
| rs56174161 | 0.83[AMR][1000 genomes] |
| rs56741879 | 0.89[AMR][1000 genomes] |
| rs56890199 | 0.84[AMR][1000 genomes] |
| rs57441646 | 0.83[AMR][1000 genomes] |
| rs59827519 | 0.94[AMR][1000 genomes] |
| rs60228180 | 0.89[AMR][1000 genomes] |
| rs60801542 | 0.94[AMR][1000 genomes] |
| rs61193379 | 0.89[AMR][1000 genomes] |
| rs61388164 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61578814 | 0.94[AMR][1000 genomes] |
| rs61596736 | 0.94[AMR][1000 genomes] |
| rs73875453 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73875456 | 0.83[AMR][1000 genomes] |
| rs73875458 | 0.89[AMR][1000 genomes] |
| rs73875460 | 0.83[AMR][1000 genomes] |
| rs73875464 | 0.83[AMR][1000 genomes] |
| rs73875472 | 0.89[AMR][1000 genomes] |
| rs73875473 | 0.94[AMR][1000 genomes] |
| rs73875482 | 0.89[AMR][1000 genomes] |
| rs73875492 | 0.89[AMR][1000 genomes] |
| rs73875500 | 0.83[AMR][1000 genomes] |
| rs73875502 | 0.83[AMR][1000 genomes] |
| rs73878303 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
