Variant report

Variant	rs73875453
Chromosome Location	chr3:160935261-160935262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr3:160935241-160935745	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:160935142-160935769	U87	brain:	n/a	n/a
3	CTCF	chr3:160935200-160935350	BE2_C	brain:	n/a	n/a
4	CTCF	chr3:160935160-160935310	MCF-7	breast:	n/a	n/a
5	CTCF	chr3:160935260-160935410	HEK293	kidney:	n/a	n/a
6	FOXA1	chr3:160935221-160935675	HepG2	liver:	n/a	n/a
7	FOSL1	chr3:160935138-160935783	HCT-116	colon:	n/a	n/a
8	POLR2A	chr3:160935151-160935703	U87	brain:	n/a	n/a
9	FOSL2	chr3:160935215-160935660	HepG2	liver:	n/a	n/a
10	FOSL1	chr3:160935153-160935850	HCT-116	colon:	n/a	n/a
11	MYBL2	chr3:160935261-160935765	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:160926575..160929147-chr3:160933647..160936135,2	MCF-7	breast:
2	chr3:160926864..160930138-chr3:160930541..160935617,4	K562	blood:
3	chr3:160932675..160935542-chr3:160975472..160977359,2	K562	blood:
4	chr3:160934982..160947568-chr3:161079696..161093037,40	MCF-7	breast:
5	chr3:160932526..160936178-chr3:160936820..160939215,4	K562	blood:
6	chr3:160932849..160935746-chr3:161089870..161091599,2	MCF-7	breast:
7	chr3:160933762..160935410-chr3:160953551..160955059,2	MCF-7	breast:

No data

Variant related genes	Relation type
NMD3	TF binding region
ENSG00000169251	Chromatin interaction
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12374001	0.83[AMR][1000 genomes]
rs12629152	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12629929	0.94[AMR][1000 genomes]
rs12631467	0.94[AMR][1000 genomes]
rs12633103	0.94[AMR][1000 genomes]
rs12636434	0.94[AMR][1000 genomes]
rs12636573	0.83[AMR][1000 genomes]
rs12636590	0.83[AMR][1000 genomes]
rs1450530	0.81[AMR][1000 genomes]
rs16834031	0.94[AMR][1000 genomes]
rs28853731	0.83[AMR][1000 genomes]
rs4132373	0.83[AMR][1000 genomes]
rs55949838	0.94[AMR][1000 genomes]
rs56174161	0.94[AMR][1000 genomes]
rs57441646	0.94[AMR][1000 genomes]
rs59827519	0.83[AMR][1000 genomes]
rs60277631	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60801542	0.83[AMR][1000 genomes]
rs61388164	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61578814	0.83[AMR][1000 genomes]
rs61596736	0.83[AMR][1000 genomes]
rs73875455	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73875456	0.94[AMR][1000 genomes]
rs73875460	0.94[AMR][1000 genomes]
rs73875464	0.94[AMR][1000 genomes]
rs73875473	0.83[AMR][1000 genomes]
rs73875500	0.94[AMR][1000 genomes]
rs73875502	0.94[AMR][1000 genomes]
rs73878303	0.94[AMR][1000 genomes]
rs73878304	0.81[AMR][1000 genomes]
rs7652447	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1015063	chr3:160918307-161024070	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160926000-160938400	Weak transcription	Brain Substantia Nigra	brain
2	chr3:160931000-160938600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:160931800-160937200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:160931800-160938400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:160933200-160939000	Weak transcription	Gastric	stomach
6	chr3:160933400-160938600	Weak transcription	Stomach Mucosa	stomach
7	chr3:160933600-160938400	Weak transcription	Fetal Intestine Large	intestine
8	chr3:160934600-160936000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:160935000-160935600	Enhancers	Hela-S3	cervix
10	chr3:160935200-160935400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:160935200-160935600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:160935200-160935800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:160935200-160935800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:160935200-160935800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:160935200-160935800	Enhancers	HepG2	liver
16	chr3:160935200-160935800	Enhancers	NHDF-Ad	bronchial
17	chr3:160935200-160936000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:160935200-160936000	Enhancers	Osteobl	bone
19	chr3:160935200-160937000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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