Variant report

Variant	rs1450530
Chromosome Location	chr3:161058805-161058806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:161001819..161012846-chr3:161052557..161065154,32	MCF-7	breast:
2	chr3:161031627..161035949-chr3:161055362..161059558,6	MCF-7	breast:
3	chr22:39639549..39641167-chr3:161057655..161060479,2	MCF-7	breast:
4	chr3:161042109..161044562-chr3:161058166..161061121,3	MCF-7	breast:
5	chr3:160990337..160994329-chr3:161056046..161062548,7	MCF-7	breast:
6	chr3:160938417..160941849-chr3:161057237..161059052,3	MCF-7	breast:
7	chr3:160939100..160942199-chr3:161058343..161060677,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100311	Chromatin interaction
ENSG00000240138	Chromatin interaction
ENSG00000169251	Chromatin interaction
ENSG00000271052	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11539155	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12374001	0.85[EUR][1000 genomes]
rs12629152	0.85[EUR][1000 genomes]
rs12629929	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12631467	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12633103	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12636434	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12636573	0.85[EUR][1000 genomes]
rs12636590	0.85[EUR][1000 genomes]
rs16832237	0.89[EUR][1000 genomes]
rs16834031	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28384383	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28853731	0.85[EUR][1000 genomes]
rs4132373	0.85[EUR][1000 genomes]
rs55949838	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56174161	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57441646	0.88[AMR][1000 genomes]
rs59827519	0.85[EUR][1000 genomes]
rs60801542	0.85[EUR][1000 genomes]
rs61388164	0.81[AMR][1000 genomes]
rs61578814	0.85[EUR][1000 genomes]
rs61596736	0.85[EUR][1000 genomes]
rs6800515	1.00[EUR][1000 genomes]
rs73162584	0.89[EUR][1000 genomes]
rs73162595	0.89[EUR][1000 genomes]
rs73162599	0.89[EUR][1000 genomes]
rs73875453	0.81[AMR][1000 genomes]
rs73875455	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73875456	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73875460	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73875464	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73875472	0.81[EUR][1000 genomes]
rs73875473	0.85[EUR][1000 genomes]
rs73875500	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73875502	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73878303	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73878304	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73878305	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7652447	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv4091	chr3:161018540-161063875	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
5	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161051800-161061800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:161054000-161062600	Enhancers	HepG2	liver
3	chr3:161057200-161059200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:161058200-161072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:161058400-161067000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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