Variant report

Variant	rs73162595
Chromosome Location	chr3:161120851-161120852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12633103	0.85[EUR][1000 genomes]
rs12636434	0.85[EUR][1000 genomes]
rs1450530	0.89[EUR][1000 genomes]
rs16832237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16834031	0.85[EUR][1000 genomes]
rs55949838	0.85[EUR][1000 genomes]
rs6800515	0.89[EUR][1000 genomes]
rs73162580	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73162584	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162599	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164178	0.81[AMR][1000 genomes]
rs73875500	0.85[EUR][1000 genomes]
rs73875502	0.85[EUR][1000 genomes]
rs73878303	0.85[EUR][1000 genomes]
rs73878304	0.85[EUR][1000 genomes]
rs73878305	0.85[EUR][1000 genomes]
rs7652447	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
5	nsv524747	chr3:161120483-161123526	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161113600-161127600	Weak transcription	NHEK	skin
2	chr3:161119000-161124400	Weak transcription	Liver	Liver
3	chr3:161120400-161123000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:161120600-161121200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:161120600-161121400	Enhancers	Hela-S3	cervix
6	chr3:161120800-161121000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:161120800-161121000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:161120800-161121000	Enhancers	NHDF-Ad	bronchial
9	chr3:161120800-161121200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:161120800-161121200	Enhancers	Stomach Mucosa	stomach
11	chr3:161120800-161121600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links