Variant report

Variant	rs73878304
Chromosome Location	chr3:161064291-161064292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161001819..161012846-chr3:161052557..161065154,32	MCF-7	breast:
2	chr3:161017448..161020301-chr3:161062969..161065681,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11539155	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12108169	0.80[ASN][1000 genomes]
rs12374001	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12629152	0.90[EUR][1000 genomes]
rs12629929	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12630038	0.81[ASN][1000 genomes]
rs12631467	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12632346	0.80[ASN][1000 genomes]
rs12633103	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12636434	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12636573	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12636590	0.90[EUR][1000 genomes]
rs1450530	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16832237	0.85[EUR][1000 genomes]
rs16834031	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28384383	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28853731	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4132373	0.90[EUR][1000 genomes]
rs55949838	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56174161	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56741879	0.81[ASN][1000 genomes]
rs56890199	0.81[ASN][1000 genomes]
rs57441646	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59827519	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60801542	0.90[EUR][1000 genomes]
rs61193379	0.81[ASN][1000 genomes]
rs61388164	0.81[AMR][1000 genomes]
rs61578814	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61596736	0.90[EUR][1000 genomes]
rs6800515	0.95[EUR][1000 genomes]
rs73162584	0.85[EUR][1000 genomes]
rs73162595	0.85[EUR][1000 genomes]
rs73162599	0.85[EUR][1000 genomes]
rs73875453	0.81[AMR][1000 genomes]
rs73875455	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875456	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875460	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875464	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875472	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73875473	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73875482	0.81[ASN][1000 genomes]
rs73875492	0.81[ASN][1000 genomes]
rs73875500	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73875502	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73878303	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73878305	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652447	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
4	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161058200-161072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:161058400-161067000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:161059200-161064400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:161059800-161089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:161060600-161070200	Weak transcription	Esophagus	oesophagus
6	chr3:161062200-161067400	Weak transcription	Gastric	stomach
7	chr3:161062400-161065400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:161062600-161067600	Weak transcription	HepG2	liver
9	chr3:161063200-161067000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:161063200-161067200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:161063600-161066000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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