Variant report

Variant	rs73878303
Chromosome Location	chr3:161057686-161057687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:160990169..160990978-chr3:161057288..161058124,6	MCF-7	breast:
2	chr3:161008738..161009836-chr3:161057294..161058188,4	MCF-7	breast:
3	chr3:161001819..161012846-chr3:161052557..161065154,32	MCF-7	breast:
4	chr3:150454794..150455301-chr3:161057325..161057943,2	MCF-7	breast:
5	chr3:161031627..161035949-chr3:161055362..161059558,6	MCF-7	breast:
6	chr22:39639549..39641167-chr3:161057655..161060479,2	MCF-7	breast:
7	chr3:160783790..160785578-chr3:161057040..161058658,2	MCF-7	breast:
8	chr3:160939799..160942202-chr3:161055677..161057853,2	MCF-7	breast:
9	chr3:161022226..161023030-chr3:161057225..161057825,2	MCF-7	breast:
10	chr3:160990337..160994329-chr3:161056046..161062548,7	MCF-7	breast:
11	chr3:160938417..160941849-chr3:161057237..161059052,3	MCF-7	breast:
12	chr3:160748629..160749475-chr3:161057341..161057842,2	MCF-7	breast:
13	chr3:161057161..161057765-chr3:161129649..161130192,3	MCF-7	breast:
14	chr3:160990342..160991092-chr3:161057089..161058207,13	MCF-7	breast:
15	chr3:161056968..161057820-chr3:161138358..161138956,2	MCF-7	breast:
16	chr3:161057222..161057922-chr3:161123207..161123785,2	MCF-7	breast:
17	chr3:161057284..161057901-chr3:161140131..161140710,2	MCF-7	breast:
18	chr3:161008888..161009457-chr3:161057192..161058188,2	MCF-7	breast:
19	chr3:160818340..160819319-chr3:161057179..161057934,3	MCF-7	breast:
20	chr3:161057160..161058115-chr3:161139794..161140383,2	MCF-7	breast:
21	chr3:161057269..161057791-chr3:161129680..161130247,2	MCF-7	breast:
22	chr3:161057209..161058115-chr3:161139794..161140683,3	MCF-7	breast:
23	chr3:150454737..150455301-chr3:161057286..161057825,2	MCF-7	breast:
24	chr3:160990342..160991092-chr3:161057089..161058101,14	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100311	Chromatin interaction
ENSG00000271052	Chromatin interaction
ENSG00000169251	Chromatin interaction
ENSG00000169255	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11539155	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12108169	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12374001	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12629152	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12629929	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12630038	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12631467	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12632346	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12633103	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12636434	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12636573	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12636590	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1450530	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16832237	0.85[EUR][1000 genomes]
rs16834031	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1904204	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28384383	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28853731	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4132373	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55949838	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56174161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56741879	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56890199	0.83[ASN][1000 genomes]
rs57441646	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59827519	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60228180	0.84[AMR][1000 genomes]
rs60277631	0.83[AMR][1000 genomes]
rs60801542	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61193379	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61388164	0.94[AMR][1000 genomes]
rs61578814	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61596736	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6800515	0.95[EUR][1000 genomes]
rs73162584	0.85[EUR][1000 genomes]
rs73162595	0.85[EUR][1000 genomes]
rs73162599	0.85[EUR][1000 genomes]
rs73875453	0.94[AMR][1000 genomes]
rs73875455	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875456	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875458	0.84[AMR][1000 genomes]
rs73875460	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73875464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73875472	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73875473	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73875482	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73875492	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73875500	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73878304	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73878305	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7652447	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv4091	chr3:161018540-161063875	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
5	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161051800-161061800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:161054000-161062600	Enhancers	HepG2	liver
3	chr3:161056800-161058200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:161057200-161058400	Enhancers	NHDF-Ad	bronchial
5	chr3:161057200-161059200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:161057600-161058400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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