Variant report

Variant	rs7652447
Chromosome Location	chr3:161062331-161062332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:161001819..161012846-chr3:161052557..161065154,32	MCF-7	breast:
2	chr3:160990337..160994329-chr3:161056046..161062548,7	MCF-7	breast:
3	chr3:160944645..160947567-chr3:161062300..161064124,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11539155	0.85[EUR][1000 genomes]
rs12108169	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs12374001	1.00[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12629152	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12629929	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12631467	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12632346	0.89[JPT][hapmap]
rs12633103	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12636434	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12636573	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12636590	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1450530	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16832237	0.85[EUR][1000 genomes]
rs16834031	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28384383	0.85[EUR][1000 genomes]
rs28853731	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4132373	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55949838	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56174161	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57441646	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59827519	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60801542	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61388164	0.88[AMR][1000 genomes]
rs61578814	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61596736	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6800515	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs73162584	0.85[EUR][1000 genomes]
rs73162595	0.85[EUR][1000 genomes]
rs73162599	0.85[EUR][1000 genomes]
rs73875453	0.88[AMR][1000 genomes]
rs73875455	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875456	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875460	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875464	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875472	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73875473	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73875500	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73875502	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73878303	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73878304	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73878305	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv4091	chr3:161018540-161063875	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
5	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161054000-161062600	Enhancers	HepG2	liver
2	chr3:161058200-161072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:161058400-161067000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:161059200-161064400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:161059800-161089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:161060600-161070200	Weak transcription	Esophagus	oesophagus
7	chr3:161061000-161063600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr3:161061800-161063200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:161062200-161067400	Weak transcription	Gastric	stomach

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