Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:160924095..160925710-chr3:160926793..160928479,2	MCF-7	breast:
2	chr3:160922110..160927957-chr3:161089020..161092502,5	MCF-7	breast:
3	chr3:160923803..160926390-chr3:160929220..160930848,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12374001	0.83[AMR][1000 genomes]
rs12629152	0.83[AMR][1000 genomes]
rs12629929	0.94[AMR][1000 genomes]
rs12631467	0.94[AMR][1000 genomes]
rs12633103	0.94[AMR][1000 genomes]
rs12636434	0.94[AMR][1000 genomes]
rs12636573	0.83[AMR][1000 genomes]
rs12636590	0.83[AMR][1000 genomes]
rs1450530	0.81[AMR][1000 genomes]
rs16834031	0.94[AMR][1000 genomes]
rs28853731	0.83[AMR][1000 genomes]
rs4132373	0.83[AMR][1000 genomes]
rs55949838	0.94[AMR][1000 genomes]
rs56174161	0.94[AMR][1000 genomes]
rs57441646	0.94[AMR][1000 genomes]
rs59827519	0.83[AMR][1000 genomes]
rs60277631	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60801542	0.83[AMR][1000 genomes]
rs61578814	0.83[AMR][1000 genomes]
rs61596736	0.83[AMR][1000 genomes]
rs73875453	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73875455	0.81[AMR][1000 genomes]
rs73875456	0.94[AMR][1000 genomes]
rs73875460	0.94[AMR][1000 genomes]
rs73875464	0.94[AMR][1000 genomes]
rs73875473	0.83[AMR][1000 genomes]
rs73875500	0.94[AMR][1000 genomes]
rs73875502	0.94[AMR][1000 genomes]
rs73878303	0.94[AMR][1000 genomes]
rs73878304	0.81[AMR][1000 genomes]
rs7652447	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1015063	chr3:160918307-161024070	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160915000-160927000	Weak transcription	Aorta	Aorta

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