Variant report

Variant	rs73878305
Chromosome Location	chr3:161066414-161066415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160936570..160938088-chr3:161064892..161066520,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11539155	0.85[EUR][1000 genomes]
rs12374001	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12629152	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12629929	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12631467	0.90[EUR][1000 genomes]
rs12633103	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12636434	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12636573	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12636590	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1450530	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16832237	0.85[EUR][1000 genomes]
rs16834031	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28384383	0.85[EUR][1000 genomes]
rs28853731	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4132373	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55949838	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56174161	0.86[EUR][1000 genomes]
rs57441646	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59827519	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60801542	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61578814	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61596736	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6800515	0.95[EUR][1000 genomes]
rs73162584	0.85[EUR][1000 genomes]
rs73162595	0.85[EUR][1000 genomes]
rs73162599	0.85[EUR][1000 genomes]
rs73875455	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73875456	0.90[EUR][1000 genomes]
rs73875460	0.90[EUR][1000 genomes]
rs73875464	0.90[EUR][1000 genomes]
rs73875472	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73875473	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73875500	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73875502	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73878303	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73878304	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652447	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
4	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161058200-161072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:161058400-161067000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:161059800-161089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:161060600-161070200	Weak transcription	Esophagus	oesophagus
5	chr3:161062200-161067400	Weak transcription	Gastric	stomach
6	chr3:161062600-161067600	Weak transcription	HepG2	liver
7	chr3:161063200-161067000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:161063200-161067200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:161064400-161067000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:161064400-161083000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:161065400-161069200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:161065600-161068200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:161065600-161069000	Enhancers	NHDF-Ad	bronchial
14	chr3:161065800-161068200	Enhancers	Osteobl	bone
15	chr3:161065800-161068800	Enhancers	NH-A	brain
16	chr3:161065800-161069000	Enhancers	HMEC	breast
17	chr3:161065800-161069200	Enhancers	NHEK	skin
18	chr3:161065800-161069600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:161066000-161068800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr3:161066200-161066600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:161066200-161067400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:161066200-161068400	Enhancers	Stomach Mucosa	stomach
23	chr3:161066200-161068600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:161066200-161069400	Enhancers	Hela-S3	cervix
25	chr3:161066400-161068200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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