Variant report

Variant	rs60289416
Chromosome Location	chr6:163817089-163817090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57734672	1.00[AFR][1000 genomes]
rs58679730	1.00[AFR][1000 genomes]
rs59322352	0.86[AFR][1000 genomes]
rs59771042	0.81[AFR][1000 genomes]
rs60210494	1.00[AFR][1000 genomes]
rs60918367	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1791729	chr6:163814557-163836689	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163808600-163817600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:163809800-163819800	Weak transcription	Spleen	Spleen
3	chr6:163809800-163825600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:163811000-163817400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:163812600-163817400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:163813200-163817200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:163813200-163817600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:163813400-163817600	Weak transcription	Right Atrium	heart
9	chr6:163813800-163817600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:163813800-163817600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:163813800-163817600	Weak transcription	NHDF-Ad	bronchial
12	chr6:163813800-163817800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:163813800-163818000	Weak transcription	Liver	Liver
14	chr6:163814000-163817200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:163814000-163817400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:163814000-163817400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:163814000-163817400	Weak transcription	Fetal Lung	lung
18	chr6:163814000-163817400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:163814000-163817400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:163814000-163817400	Weak transcription	NH-A	brain
21	chr6:163814000-163817600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:163814000-163817600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:163814000-163817600	Weak transcription	Psoas Muscle	Psoas
24	chr6:163814000-163817600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:163814000-163817800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:163814000-163817800	Weak transcription	HSMM	muscle
27	chr6:163814000-163817800	Weak transcription	NHLF	lung
28	chr6:163814200-163817400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:163814200-163817800	Weak transcription	HMEC	breast
30	chr6:163814400-163817400	Weak transcription	Fetal Brain Male	brain
31	chr6:163814600-163817400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:163814800-163817400	Enhancers	Brain Substantia Nigra	brain
33	chr6:163815000-163817200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:163815000-163817400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:163815000-163817600	Enhancers	Brain Hippocampus Middle	brain
36	chr6:163815000-163818600	Enhancers	Fetal Heart	heart
37	chr6:163815200-163817400	Weak transcription	NHEK	skin
38	chr6:163815200-163819400	Weak transcription	HSMMtube	muscle
39	chr6:163815400-163817400	Weak transcription	Adipose Nuclei	Adipose
40	chr6:163815400-163817400	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:163815400-163817600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:163815600-163817400	Enhancers	Brain Anterior Caudate	brain
43	chr6:163815600-163817400	Weak transcription	HUVEC	blood vessel
44	chr6:163815600-163817600	Weak transcription	Placenta	Placenta
45	chr6:163815800-163817400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:163815800-163817600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:163816000-163817600	Weak transcription	Left Ventricle	heart
48	chr6:163816000-163817800	Weak transcription	Lung	lung
49	chr6:163816200-163817600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:163816400-163817400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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