Variant report

Variant	rs58679730
Chromosome Location	chr6:163878304-163878305
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163873882..163876794-chr6:163877974..163880683,2	K562	blood:
2	chr6:163870026..163872453-chr6:163876589..163878532,2	K562	blood:
3	chr6:163863925..163866633-chr6:163876893..163879204,2	MCF-7	breast:
4	chr6:163878253..163881131-chr6:163881459..163884552,3	K562	blood:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57734672	1.00[AFR][1000 genomes]
rs59322352	0.86[AFR][1000 genomes]
rs59771042	0.81[AFR][1000 genomes]
rs60210494	1.00[AFR][1000 genomes]
rs60289416	1.00[AFR][1000 genomes]
rs60918367	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv523664	chr6:163858237-163907885	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163840800-163881400	Weak transcription	Fetal Stomach	stomach
2	chr6:163848800-163878400	Weak transcription	Pancreas	Pancrea
3	chr6:163852000-163880000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:163860800-163878400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:163860800-163880000	Weak transcription	Lung	lung
6	chr6:163862800-163878600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:163863000-163880200	Weak transcription	Esophagus	oesophagus
8	chr6:163863200-163879200	Weak transcription	Fetal Brain Male	brain
9	chr6:163863600-163878400	Weak transcription	Primary T cells from cord blood	blood
10	chr6:163863600-163878800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:163863800-163878800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:163865200-163881400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:163865400-163878600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:163865400-163878800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:163869800-163878600	Weak transcription	Ovary	ovary
16	chr6:163872000-163878800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:163872200-163878400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:163872200-163880000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:163872400-163878400	Weak transcription	Gastric	stomach
20	chr6:163872800-163878400	Weak transcription	Aorta	Aorta
21	chr6:163873000-163880400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:163873400-163880200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:163873600-163878800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:163874400-163880200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:163875000-163878600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:163875000-163880200	Weak transcription	Thymus	Thymus
27	chr6:163875200-163880000	Weak transcription	Fetal Thymus	thymus
28	chr6:163875600-163878400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:163875600-163879200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:163875600-163880000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:163875600-163880400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:163875800-163878800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:163876200-163878600	Genic enhancers	HSMM	muscle
34	chr6:163876200-163878800	Enhancers	NHLF	lung
35	chr6:163876200-163880000	Genic enhancers	Brain Anterior Caudate	brain
36	chr6:163876400-163878400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:163876400-163878400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr6:163876600-163878400	Strong transcription	Primary B cells from cord blood	blood
39	chr6:163876600-163878400	Strong transcription	K562	blood
40	chr6:163876600-163878400	Weak transcription	Osteobl	bone
41	chr6:163876600-163878600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:163876600-163878800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:163876600-163879200	Strong transcription	HepG2	liver
44	chr6:163876600-163879600	Strong transcription	Primary hematopoietic stem cells	blood
45	chr6:163876600-163880800	Enhancers	Right Ventricle	heart
46	chr6:163876600-163881000	Enhancers	HSMMtube	muscle
47	chr6:163876800-163878400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:163876800-163879200	Genic enhancers	Brain Angular Gyrus	brain
49	chr6:163876800-163880600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
50	chr6:163876800-163881200	Weak transcription	Fetal Brain Female	brain

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