Variant report

Variant	rs60210494
Chromosome Location	chr6:163879942-163879943
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163873882..163876794-chr6:163877974..163880683,2	K562	blood:
2	chr6:163879929..163881986-chr6:163883834..163886314,2	K562	blood:
3	chr6:163878253..163881131-chr6:163881459..163884552,3	K562	blood:
4	chr6:163878553..163880705-chr6:163884842..163887651,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57734672	1.00[AFR][1000 genomes]
rs58679730	1.00[AFR][1000 genomes]
rs59322352	0.86[AFR][1000 genomes]
rs59771042	0.81[AFR][1000 genomes]
rs60289416	1.00[AFR][1000 genomes]
rs60918367	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv523664	chr6:163858237-163907885	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163840800-163881400	Weak transcription	Fetal Stomach	stomach
2	chr6:163852000-163880000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:163860800-163880000	Weak transcription	Lung	lung
4	chr6:163863000-163880200	Weak transcription	Esophagus	oesophagus
5	chr6:163865200-163881400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:163872200-163880000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:163873000-163880400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:163873400-163880200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:163874400-163880200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:163875000-163880200	Weak transcription	Thymus	Thymus
11	chr6:163875200-163880000	Weak transcription	Fetal Thymus	thymus
12	chr6:163875600-163880000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:163875600-163880400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:163876200-163880000	Genic enhancers	Brain Anterior Caudate	brain
15	chr6:163876600-163880800	Enhancers	Right Ventricle	heart
16	chr6:163876600-163881000	Enhancers	HSMMtube	muscle
17	chr6:163876800-163880600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:163876800-163881200	Weak transcription	Fetal Brain Female	brain
19	chr6:163877000-163880200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:163877200-163880000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:163877400-163880800	Genic enhancers	Brain Hippocampus Middle	brain
22	chr6:163877600-163881200	Enhancers	Colon Smooth Muscle	Colon
23	chr6:163877800-163880000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr6:163877800-163880600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:163877800-163880600	Genic enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:163877800-163880600	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr6:163877800-163881000	Weak transcription	Fetal Intestine Small	intestine
28	chr6:163877800-163881000	Enhancers	NH-A	brain
29	chr6:163877800-163881800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:163878000-163880000	Genic enhancers	Brain Inferior Temporal Lobe	brain
31	chr6:163878000-163880000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:163878000-163880000	Weak transcription	Dnd41	blood
33	chr6:163878000-163880600	Genic enhancers	Monocytes-CD14+_RO01746	blood
34	chr6:163878000-163880800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:163878000-163881800	Enhancers	HMEC	breast
36	chr6:163878200-163880400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:163878200-163880800	Genic enhancers	GM12878-XiMat	blood
38	chr6:163878400-163880400	Enhancers	Primary T cells from cord blood	blood
39	chr6:163878400-163880400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:163878400-163880600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:163878400-163880600	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr6:163878400-163881000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:163878400-163881200	Genic enhancers	K562	blood
44	chr6:163878600-163880400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:163878600-163880400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:163878600-163880600	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr6:163878600-163881000	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr6:163878600-163881000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:163878600-163881200	Enhancers	Liver	Liver
50	chr6:163878600-163881200	Enhancers	HSMM	muscle

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