Variant report

Variant	rs60918367
Chromosome Location	chr6:163920230-163920231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163919801..163922242-chr6:163941031..163943536,2	K562	blood:
2	chr6:163907164..163909341-chr6:163918489..163921263,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57734672	1.00[AFR][1000 genomes]
rs58679730	1.00[AFR][1000 genomes]
rs59322352	0.86[AFR][1000 genomes]
rs59771042	0.81[AFR][1000 genomes]
rs60210494	1.00[AFR][1000 genomes]
rs60289416	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv524205	chr6:163919517-163938331	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2763608	chr6:163920117-163943429	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163898400-163926000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163902600-163921800	Weak transcription	HepG2	liver
3	chr6:163903000-163924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:163903600-163926000	Weak transcription	Lung	lung
5	chr6:163905800-163921800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:163907200-163925000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:163907200-163926000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:163909200-163921000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:163909400-163923800	Weak transcription	Aorta	Aorta
10	chr6:163909600-163922600	Weak transcription	Fetal Brain Female	brain
11	chr6:163911200-163926000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:163911200-163926200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:163911600-163928000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:163911800-163934800	Weak transcription	Pancreas	Pancrea
15	chr6:163912200-163920800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:163912200-163921600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:163912200-163921600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:163912400-163921000	Weak transcription	Fetal Lung	lung
19	chr6:163912400-163921000	Weak transcription	NHLF	lung
20	chr6:163912400-163926200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:163912600-163925200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:163913000-163928000	Weak transcription	HUVEC	blood vessel
23	chr6:163913800-163922800	Enhancers	Brain Angular Gyrus	brain
24	chr6:163915600-163925400	Weak transcription	A549	lung
25	chr6:163915600-163926000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:163915600-163928000	Weak transcription	Osteobl	bone
27	chr6:163915800-163922600	Weak transcription	K562	blood
28	chr6:163915800-163927400	Weak transcription	HSMM	muscle
29	chr6:163916000-163929200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:163916200-163928200	Enhancers	Brain Substantia Nigra	brain
31	chr6:163917000-163928000	Weak transcription	Liver	Liver
32	chr6:163917600-163925000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:163917800-163922200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:163917800-163923000	Weak transcription	Psoas Muscle	Psoas
35	chr6:163917800-163925000	Weak transcription	Right Atrium	heart
36	chr6:163918000-163920600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:163918000-163920600	Weak transcription	Right Ventricle	heart
38	chr6:163918000-163922200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:163918000-163922200	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:163918200-163921000	Weak transcription	Adipose Nuclei	Adipose
41	chr6:163918400-163920400	Weak transcription	Brain Germinal Matrix	brain
42	chr6:163918600-163922600	Enhancers	Brain Hippocampus Middle	brain
43	chr6:163918800-163921000	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr6:163919200-163922400	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr6:163919200-163922800	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr6:163919200-163923200	Enhancers	Fetal Heart	heart
47	chr6:163919400-163922800	Enhancers	Brain Cingulate Gyrus	brain
48	chr6:163919600-163923800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:163919800-163920800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:163919800-163922200	Weak transcription	Left Ventricle	heart

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