The 2.0 version of rSNPBase

Variant report

Variant rs60292581
Chromosome Location chr6:12058487-12058488
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:12034800-12061000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr6:12040200-12060800 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr6:12040400-12058800 Weak transcription Fetal Muscle Leg muscle
4 chr6:12040400-12059600 Weak transcription iPS-18 Cell Line embryonic stem cell
5 chr6:12041000-12060800 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr6:12045600-12058600 Weak transcription A549 lung
7 chr6:12045600-12058800 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr6:12045600-12059800 Weak transcription Left Ventricle heart
9 chr6:12045600-12059800 Weak transcription Psoas Muscle Psoas
10 chr6:12045600-12061000 Weak transcription Fetal Thymus thymus
11 chr6:12045600-12061000 Weak transcription Pancreas Pancrea
12 chr6:12045600-12061200 Weak transcription Gastric stomach
13 chr6:12045600-12065800 Weak transcription Aorta Aorta
14 chr6:12045600-12066200 Weak transcription HSMM muscle
15 chr6:12045600-12066400 Weak transcription Hela-S3 cervix
16 chr6:12045800-12066000 Weak transcription HUVEC blood vessel
17 chr6:12046000-12060800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr6:12047800-12058800 Weak transcription Esophagus oesophagus
19 chr6:12047800-12059800 Weak transcription H1 Cell Line embryonic stem cell
20 chr6:12048000-12060800 Weak transcription Fetal Intestine Small intestine
21 chr6:12048000-12061200 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr6:12048200-12060800 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr6:12048200-12062800 Weak transcription K562 blood
24 chr6:12048600-12060800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr6:12048600-12060800 Weak transcription Fetal Intestine Large intestine
26 chr6:12048600-12061000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr6:12048600-12061200 Weak transcription Fetal Stomach stomach
28 chr6:12050600-12065800 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr6:12050600-12066000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr6:12051200-12061000 Weak transcription Primary T cells fromperipheralblood blood
31 chr6:12051200-12061000 Weak transcription Lung lung
32 chr6:12052600-12060800 Weak transcription Thymus Thymus
33 chr6:12052600-12061000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr6:12053000-12060800 Weak transcription Rectal Smooth Muscle rectum
35 chr6:12053400-12058800 Weak transcription Colon Smooth Muscle Colon
36 chr6:12053400-12060800 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr6:12054000-12060800 Weak transcription Primary hematopoietic stem cells blood
38 chr6:12054000-12061000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
39 chr6:12054200-12058800 Weak transcription Primary B cells from cord blood blood
40 chr6:12054200-12060600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
41 chr6:12055400-12061000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
42 chr6:12056200-12061200 Weak transcription H9 Cell Line embryonic stem cell
43 chr6:12056400-12060800 Weak transcription Brain Inferior Temporal Lobe brain
44 chr6:12057000-12060800 Enhancers Primary T helper cells PMA-I stimulated --
45 chr6:12057600-12058800 Enhancers Primary T cells from cord blood blood
46 chr6:12057600-12058800 Enhancers GM12878-XiMat blood
47 chr6:12057600-12059000 Enhancers Primary T helper naive cells fromperipheralblood blood
48 chr6:12057600-12059400 Enhancers Primary B cells from peripheral blood blood
49 chr6:12057800-12059200 Enhancers Primary monocytes fromperipheralblood blood
50 chr6:12058000-12059000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015