Variant report

Variant	rs219968
Chromosome Location	chr6:12182702-12182703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10478703	1.00[EUR][1000 genomes]
rs219967	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57974576	1.00[EUR][1000 genomes]
rs60292581	1.00[EUR][1000 genomes]
rs6905883	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6921949	1.00[EUR][1000 genomes]
rs6933257	1.00[EUR][1000 genomes]
rs6936667	1.00[MEX][hapmap]
rs73369214	1.00[EUR][1000 genomes]
rs73724337	1.00[EUR][1000 genomes]
rs7763090	1.00[EUR][1000 genomes]
rs7767368	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12164800-12185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:12176000-12182800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:12176200-12203400	Weak transcription	A549	lung
4	chr6:12181000-12185400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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