Variant report

Variant	rs73369214
Chromosome Location	chr6:12363114-12363115
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12361881..12364401-chr6:12373576..12375787,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10478703	1.00[EUR][1000 genomes]
rs1334306	1.00[EUR][1000 genomes]
rs1334307	1.00[EUR][1000 genomes]
rs219967	1.00[EUR][1000 genomes]
rs219968	1.00[EUR][1000 genomes]
rs2504866	1.00[EUR][1000 genomes]
rs57317303	1.00[EUR][1000 genomes]
rs60493852	1.00[EUR][1000 genomes]
rs6458322	1.00[EUR][1000 genomes]
rs6916851	1.00[EUR][1000 genomes]
rs6928058	1.00[EUR][1000 genomes]
rs6933484	1.00[EUR][1000 genomes]
rs73722796	1.00[EUR][1000 genomes]
rs7763090	1.00[EUR][1000 genomes]
rs9462819	1.00[EUR][1000 genomes]
rs9462825	1.00[EUR][1000 genomes]
rs9462830	1.00[EUR][1000 genomes]
rs9462834	1.00[EUR][1000 genomes]
rs9471867	1.00[EUR][1000 genomes]
rs9471922	1.00[EUR][1000 genomes]
rs9471924	1.00[EUR][1000 genomes]
rs9472012	1.00[EUR][1000 genomes]
rs9472013	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12354200-12365600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:12355800-12365600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:12356000-12365400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:12356200-12365800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:12356200-12372000	Weak transcription	Aorta	Aorta
6	chr6:12356400-12365400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:12357800-12371200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:12360200-12364000	Enhancers	GM12878-XiMat	blood
9	chr6:12361400-12364600	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:12361800-12364000	Enhancers	A549	lung
11	chr6:12362000-12365800	Weak transcription	Small Intestine	intestine
12	chr6:12362200-12364000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:12362200-12364400	Enhancers	Primary B cells from cord blood	blood
14	chr6:12362200-12364400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:12362200-12364400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:12362400-12363200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:12362400-12363400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:12362400-12364400	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:12362400-12364800	Enhancers	Pancreas	Pancrea
20	chr6:12362400-12365000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:12362400-12365600	Enhancers	Fetal Intestine Small	intestine
22	chr6:12362400-12367800	Enhancers	Stomach Mucosa	stomach
23	chr6:12362400-12368000	Enhancers	Fetal Intestine Large	intestine
24	chr6:12362600-12363200	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:12362600-12363600	Enhancers	Spleen	Spleen
26	chr6:12362600-12364200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr6:12362800-12364400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:12362800-12364600	Enhancers	Adipose Nuclei	Adipose
29	chr6:12363000-12363200	Enhancers	Gastric	stomach
30	chr6:12363000-12363400	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:12363000-12363400	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr6:12363000-12364400	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr6:12363000-12364600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links