Variant report

Variant	rs6936667
Chromosome Location	chr6:12019530-12019531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12017880..12021749-chr6:12024798..12028599,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16872191	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs57661362	0.83[AMR][1000 genomes]
rs6905883	1.00[MEX][hapmap]
rs6915456	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73724338	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73724339	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73724342	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970323	chr6:12006884-12020375	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12013800-12033600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12014000-12020400	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:12014000-12023200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:12014000-12023200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:12014000-12031800	Weak transcription	Brain Substantia Nigra	brain
6	chr6:12014400-12020200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:12014400-12023200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:12014400-12024800	Weak transcription	Stomach Mucosa	stomach
9	chr6:12014400-12030000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:12014600-12020400	Weak transcription	Fetal Heart	heart
11	chr6:12014600-12020600	Weak transcription	Right Atrium	heart
12	chr6:12014600-12021800	ZNF genes & repeats	GM12878-XiMat	blood
13	chr6:12014600-12032000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:12015000-12021000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:12015000-12022000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:12015000-12022000	Strong transcription	Fetal Muscle Trunk	muscle
17	chr6:12015000-12022000	Strong transcription	Fetal Muscle Leg	muscle
18	chr6:12015200-12020200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:12015200-12021200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:12015200-12021400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:12015200-12021800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr6:12015200-12023400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:12015200-12024600	Weak transcription	NHDF-Ad	bronchial
24	chr6:12015400-12020400	Weak transcription	Aorta	Aorta
25	chr6:12015400-12021000	Strong transcription	NHLF	lung
26	chr6:12015400-12021400	Strong transcription	NHEK	skin
27	chr6:12015400-12023200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:12015400-12025000	Weak transcription	Small Intestine	intestine
29	chr6:12015400-12025400	Strong transcription	Liver	Liver
30	chr6:12015400-12029200	Weak transcription	Brain Anterior Caudate	brain
31	chr6:12015400-12034000	Weak transcription	Hela-S3	cervix
32	chr6:12015600-12022000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:12015600-12023000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:12016000-12021800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:12016000-12022000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:12016200-12020800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr6:12016200-12022000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:12016400-12019600	Strong transcription	HMEC	breast
39	chr6:12016400-12020800	Strong transcription	Fetal Lung	lung
40	chr6:12016400-12022000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:12016800-12022000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:12017000-12019800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:12017000-12019800	Strong transcription	Esophagus	oesophagus
44	chr6:12017000-12020600	Strong transcription	Spleen	Spleen
45	chr6:12017000-12021000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:12017000-12021000	Strong transcription	Rectal Smooth Muscle	rectum
47	chr6:12017000-12021000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr6:12017000-12022400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:12017000-12023400	Strong transcription	Fetal Intestine Small	intestine
50	chr6:12017200-12020600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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