Variant report

Variant	rs73724342
Chromosome Location	chr6:12034734-12034735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:12011848..12014555-chr6:12033486..12035061,2	MCF-7	breast:
2	chr6:11771369..11773574-chr6:12033806..12036674,2	MCF-7	breast:
3	chr6:12034336..12036459-chr6:12037045..12039033,2	MCF-7	breast:
4	chr6:12031473..12034779-chr6:12051135..12055032,3	K562	blood:
5	chr6:12029801..12032269-chr6:12032604..12035769,3	MCF-7	breast:
6	chr6:11700027..11700890-chr6:12034347..12035299,2	MCF-7	breast:
7	chr6:12010741..12013638-chr6:12032864..12036140,5	MCF-7	breast:
8	chr6:12033628..12035802-chr6:12038065..12040116,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

rs_ID	r²[population]
rs16872191	0.83[AMR][1000 genomes]
rs57661362	0.83[AMR][1000 genomes]
rs6915456	0.86[AFR][1000 genomes]
rs6936667	0.83[AFR][1000 genomes]
rs73724338	0.90[AFR][1000 genomes]
rs73724339	0.90[AFR][1000 genomes]

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12017800-12035000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:12017800-12040200	Weak transcription	Fetal Brain Male	brain
3	chr6:12018400-12039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
6	chr6:12020800-12037400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:12020800-12039400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:12022000-12037200	Weak transcription	Fetal Thymus	thymus
9	chr6:12022000-12037600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:12023200-12047800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:12023600-12039200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:12026000-12034800	Weak transcription	Aorta	Aorta
13	chr6:12026000-12044800	Weak transcription	NHDF-Ad	bronchial
14	chr6:12029200-12045000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:12029800-12042800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:12030600-12037000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:12030600-12037400	Weak transcription	Primary B cells from cord blood	blood
18	chr6:12031400-12037200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:12031600-12037000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:12031800-12035000	Weak transcription	NHLF	lung
21	chr6:12032000-12039800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:12032000-12044800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:12032000-12044800	Weak transcription	NH-A	brain
24	chr6:12032000-12047600	Weak transcription	Fetal Stomach	stomach
25	chr6:12032200-12038000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:12032200-12039600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:12032200-12039600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:12032200-12039800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:12032800-12035200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:12032800-12035400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:12033000-12035400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:12033000-12035400	Enhancers	Liver	Liver
33	chr6:12033200-12035400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:12033200-12035600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:12033200-12035600	Enhancers	Fetal Heart	heart
36	chr6:12033200-12035800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr6:12033200-12036400	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr6:12033200-12038000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:12033400-12035200	Enhancers	Placenta Amnion	Placenta Amnion
40	chr6:12033400-12035200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr6:12033400-12035200	Enhancers	Small Intestine	intestine
42	chr6:12033400-12035400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:12033600-12034800	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr6:12033600-12035000	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr6:12033600-12035000	Enhancers	Psoas Muscle	Psoas
46	chr6:12033600-12035200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:12033600-12035200	Enhancers	Right Atrium	heart
48	chr6:12033600-12035200	Enhancers	Spleen	Spleen
49	chr6:12033600-12035400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:12033600-12040000	Enhancers	Primary T cells from cord blood	blood

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