Variant report

Variant	rs60296280
Chromosome Location	chr15:34327240-34327241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34325247..34329253-chr15:34329844..34332256,3	MCF-7	breast:
2	chr15:34299066..34301596-chr15:34326883..34329699,2	MCF-7	breast:
3	chr15:34314027..34315859-chr15:34326232..34328519,2	MCF-7	breast:
4	chr15:34327076..34328752-chr15:34329743..34331266,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169857	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28672352	1.00[AMR][1000 genomes]
rs58264289	1.00[AMR][1000 genomes]
rs60028676	1.00[AMR][1000 genomes]
rs73376158	1.00[AMR][1000 genomes]
rs73376162	1.00[AMR][1000 genomes]
rs73376166	1.00[AMR][1000 genomes]
rs73376173	1.00[AMR][1000 genomes]
rs73376189	1.00[AMR][1000 genomes]
rs73378117	1.00[AMR][1000 genomes]
rs73380111	1.00[AMR][1000 genomes]
rs73380155	1.00[AMR][1000 genomes]
rs73384013	1.00[AMR][1000 genomes]
rs73384024	1.00[AMR][1000 genomes]
rs73387983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34309400-34330000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:34309600-34330000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:34316600-34329400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:34320200-34329800	Weak transcription	Hela-S3	cervix
5	chr15:34323000-34328000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:34323000-34330000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:34324800-34329800	Weak transcription	Brain Angular Gyrus	brain
8	chr15:34325200-34329400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:34326400-34327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:34326400-34328000	Enhancers	Fetal Lung	lung
11	chr15:34326600-34330200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:34326800-34327400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:34327000-34327400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:34327000-34327600	Enhancers	Fetal Kidney	kidney
15	chr15:34327000-34327800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:34327000-34328200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:34327000-34328200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:34327000-34328200	Enhancers	Fetal Stomach	stomach
19	chr15:34327000-34330000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:34327200-34327400	Enhancers	Brain Anterior Caudate	brain
21	chr15:34327200-34327400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr15:34327200-34327600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr15:34327200-34327800	Enhancers	Colon Smooth Muscle	Colon
24	chr15:34327200-34329800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:34327200-34330000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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