Variant report

Variant	rs73384013
Chromosome Location	chr15:34500019-34500020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:34499795..34503886-chr15:34627014..34631557,6	K562	blood:
2	chr15:34495437..34497822-chr15:34498910..34501986,3	K562	blood:
3	chr15:34499979..34501661-chr15:34634378..34636631,2	K562	blood:
4	chr15:34499795..34502298-chr15:34629083..34632074,3	K562	blood:
5	chr15:34498121..34503791-chr15:34514506..34519551,14	K562	blood:
6	chr15:34391225..34395745-chr15:34498845..34504196,8	K562	blood:
7	chr15:34499153..34500903-chr15:34508468..34510016,2	K562	blood:
8	chr15:34497680..34504001-chr15:34514973..34521212,14	K562	blood:
9	chr15:34417003..34419819-chr15:34499362..34502166,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000128463	Chromatin interaction
ENSG00000134153	Chromatin interaction
ENSG00000140199	Chromatin interaction
ENSG00000182117	Chromatin interaction
ENSG00000184507	Chromatin interaction
ENSG00000182405	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28672352	1.00[AMR][1000 genomes]
rs58264289	1.00[AMR][1000 genomes]
rs60028676	1.00[AMR][1000 genomes]
rs60296280	1.00[AMR][1000 genomes]
rs73376034	1.00[AMR][1000 genomes]
rs73376158	1.00[AMR][1000 genomes]
rs73376162	1.00[AMR][1000 genomes]
rs73376166	1.00[AMR][1000 genomes]
rs73376173	1.00[AMR][1000 genomes]
rs73376189	1.00[AMR][1000 genomes]
rs73378117	1.00[AMR][1000 genomes]
rs73380111	1.00[AMR][1000 genomes]
rs73380155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384024	1.00[AMR][1000 genomes]
rs73387983	1.00[AMR][1000 genomes]
rs73390101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
2	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:34464600-34500400	Weak transcription	Hela-S3	cervix
4	chr15:34466400-34500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:34467000-34500800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:34467200-34500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:34471000-34501000	Weak transcription	Aorta	Aorta
8	chr15:34471600-34500400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:34473400-34500400	Weak transcription	HSMMtube	muscle
10	chr15:34475000-34500400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:34475600-34500400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:34475600-34500400	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:34475600-34500400	Weak transcription	HUVEC	blood vessel
14	chr15:34476400-34500800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:34477600-34501000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:34477600-34501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:34478000-34500200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:34478800-34500400	Weak transcription	Thymus	Thymus
19	chr15:34478800-34500800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:34479200-34500800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:34479200-34501000	Weak transcription	Gastric	stomach
22	chr15:34479400-34500800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:34479400-34501000	Weak transcription	Left Ventricle	heart
24	chr15:34479400-34501600	Weak transcription	Lung	lung
25	chr15:34479600-34500800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:34479600-34501800	Weak transcription	Spleen	Spleen
27	chr15:34480000-34500800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:34480400-34500400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:34481000-34500400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:34481000-34500800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:34482800-34500800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:34483000-34500400	Weak transcription	GM12878-XiMat	blood
33	chr15:34483000-34500600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:34483200-34501000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr15:34485400-34500400	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:34485600-34500800	Weak transcription	Brain Substantia Nigra	brain
37	chr15:34486400-34501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:34487200-34500400	Weak transcription	Fetal Thymus	thymus
39	chr15:34488600-34500400	Weak transcription	NHLF	lung
40	chr15:34489400-34500400	Weak transcription	HepG2	liver
41	chr15:34490200-34500800	Weak transcription	Fetal Kidney	kidney
42	chr15:34490400-34500400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:34491000-34500400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr15:34491600-34501000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr15:34492000-34500800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:34492200-34500400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:34492200-34500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:34492200-34500400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:34492200-34500400	Weak transcription	Fetal Stomach	stomach
50	chr15:34492200-34501000	Weak transcription	Stomach Mucosa	stomach

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