Variant report

Variant	rs73376189
Chromosome Location	chr15:34451590-34451591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28672352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58264289	1.00[AMR][1000 genomes]
rs60028676	1.00[AMR][1000 genomes]
rs60296280	1.00[AMR][1000 genomes]
rs73376158	1.00[AMR][1000 genomes]
rs73376162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376166	1.00[AMR][1000 genomes]
rs73376173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73378117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73380111	1.00[AMR][1000 genomes]
rs73380155	1.00[AMR][1000 genomes]
rs73384013	1.00[AMR][1000 genomes]
rs73384024	1.00[AMR][1000 genomes]
rs73387983	1.00[AMR][1000 genomes]
rs73390101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:34431200-34453200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:34433400-34453200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:34434000-34453000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:34435800-34453000	Weak transcription	Stomach Mucosa	stomach
6	chr15:34438400-34453000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:34439000-34454600	Weak transcription	Brain Angular Gyrus	brain
8	chr15:34443400-34453000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:34443400-34453400	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:34443400-34456400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:34444000-34455400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:34444400-34453200	Weak transcription	Spleen	Spleen
13	chr15:34444400-34456400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:34444800-34453000	Weak transcription	Fetal Thymus	thymus
15	chr15:34444800-34453200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:34445200-34453000	Weak transcription	Lung	lung
17	chr15:34445400-34459600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:34445800-34455600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:34445800-34459400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr15:34446200-34456000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:34447200-34453200	Weak transcription	Brain Substantia Nigra	brain
22	chr15:34447400-34452200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:34447400-34453200	Weak transcription	Fetal Kidney	kidney
24	chr15:34447600-34453000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:34447800-34452000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:34447800-34453000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:34447800-34453000	Weak transcription	NHDF-Ad	bronchial
28	chr15:34447800-34453200	Weak transcription	Colonic Mucosa	Colon
29	chr15:34447800-34453200	Weak transcription	Fetal Heart	heart
30	chr15:34448000-34453000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:34448000-34453200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:34448200-34453000	Weak transcription	Brain Hippocampus Middle	brain
33	chr15:34448400-34453000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:34448400-34453000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:34448400-34453200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr15:34448600-34452800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr15:34448600-34453000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:34448600-34453000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:34448600-34453000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr15:34448600-34453000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:34448600-34453000	Weak transcription	Left Ventricle	heart
42	chr15:34448600-34453000	Weak transcription	HSMMtube	muscle
43	chr15:34448600-34453000	Weak transcription	Osteobl	bone
44	chr15:34448600-34453200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr15:34448600-34453200	Weak transcription	Pancreas	Pancrea
46	chr15:34448600-34454800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:34448800-34452400	Strong transcription	Primary B cells from cord blood	blood
48	chr15:34448800-34452600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:34448800-34452800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:34448800-34453000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links