Variant report

Variant	rs73376158
Chromosome Location	chr15:34432854-34432855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34427280..34431137-chr15:34431263..34436776,5	K562	blood:
2	chr15:34430630..34433436-chr15:34437800..34440377,2	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28672352	1.00[AMR][1000 genomes]
rs58264289	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60028676	1.00[AMR][1000 genomes]
rs60296280	1.00[AMR][1000 genomes]
rs73376162	1.00[AMR][1000 genomes]
rs73376166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376173	1.00[AMR][1000 genomes]
rs73376189	1.00[AMR][1000 genomes]
rs73378117	1.00[AMR][1000 genomes]
rs73380111	1.00[AMR][1000 genomes]
rs73380155	1.00[AMR][1000 genomes]
rs73384013	1.00[AMR][1000 genomes]
rs73384024	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73387983	1.00[AMR][1000 genomes]
rs73390101	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34415400-34434600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:34416200-34439200	Weak transcription	HUVEC	blood vessel
3	chr15:34417600-34439400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:34417800-34436800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:34419400-34434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:34419400-34441800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:34423600-34434600	Weak transcription	Left Ventricle	heart
8	chr15:34424400-34446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:34425400-34438200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:34425800-34439800	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:34426400-34434600	Weak transcription	Right Ventricle	heart
12	chr15:34427400-34435400	Weak transcription	Fetal Stomach	stomach
13	chr15:34427600-34437000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:34427800-34434600	Weak transcription	NHEK	skin
15	chr15:34427800-34446400	Weak transcription	Psoas Muscle	Psoas
16	chr15:34428000-34434800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:34428000-34438400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:34428000-34441800	Weak transcription	Esophagus	oesophagus
19	chr15:34428200-34435400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:34428400-34439800	Weak transcription	Thymus	Thymus
21	chr15:34428800-34442400	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:34429000-34442400	Weak transcription	Aorta	Aorta
23	chr15:34429000-34444400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:34429200-34434600	Weak transcription	Brain Germinal Matrix	brain
25	chr15:34429200-34446200	Strong transcription	Placenta	Placenta
26	chr15:34429400-34433000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr15:34429400-34439600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:34429400-34439600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:34429400-34445400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:34429400-34445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:34429400-34445800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:34429600-34433000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:34429600-34434600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:34429600-34438200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr15:34429600-34444800	Strong transcription	Adipose Nuclei	Adipose
36	chr15:34429600-34446400	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr15:34429800-34433600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:34429800-34446400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:34430000-34433200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:34430000-34434600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:34430000-34438400	Weak transcription	Dnd41	blood
43	chr15:34430200-34434400	Weak transcription	Fetal Kidney	kidney
44	chr15:34430200-34434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:34430200-34439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:34430200-34440200	Weak transcription	Ovary	ovary
47	chr15:34430200-34443000	Weak transcription	Fetal Brain Male	brain
48	chr15:34430200-34443800	Weak transcription	GM12878-XiMat	blood
49	chr15:34430200-34445600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr15:34430200-34446000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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