Variant report

Variant	rs60347772
Chromosome Location	chr7:14084852-14084853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs60770951	1.00[AMR][1000 genomes]
rs60969539	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61101223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73263804	1.00[AMR][1000 genomes]
rs73263827	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266009	1.00[AMR][1000 genomes]
rs73266027	1.00[AMR][1000 genomes]
rs73266073	1.00[AMR][1000 genomes]
rs73280507	1.00[AMR][1000 genomes]
rs73280515	1.00[AMR][1000 genomes]
rs73280517	1.00[AMR][1000 genomes]
rs73280547	1.00[AMR][1000 genomes]
rs73280568	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3398763	chr7:14084677-14088275	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14084800-14085800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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