Variant report
| Variant | rs73266027 |
|---|---|
| Chromosome Location | chr7:14101420-14101421 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ARL4A-10 | chr7:14100981-14101467 | NONHSAT119263 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs60347772 | 1.00[AMR][1000 genomes] |
| rs60770951 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60969539 | 1.00[AMR][1000 genomes] |
| rs61101223 | 1.00[AMR][1000 genomes] |
| rs73263804 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73263827 | 1.00[AMR][1000 genomes] |
| rs73266009 | 1.00[AMR][1000 genomes] |
| rs73266073 | 1.00[AMR][1000 genomes] |
| rs73280507 | 1.00[AMR][1000 genomes] |
| rs73280515 | 1.00[AMR][1000 genomes] |
| rs73280517 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73280547 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73280568 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019873 | chr7:13707148-14133367 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv949467 | chr7:13938464-14279074 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv1015312 | chr7:14092753-14266917 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
