Variant report

Variant	rs60969539
Chromosome Location	chr7:14070935-14070936
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10274313	0.82[ASN][1000 genomes]
rs10440959	1.00[ASN][1000 genomes]
rs11972747	0.82[ASN][1000 genomes]
rs17167771	1.00[ASN][1000 genomes]
rs17167776	1.00[ASN][1000 genomes]
rs28432372	0.82[ASN][1000 genomes]
rs60347772	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60770951	1.00[AMR][1000 genomes]
rs61101223	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964212	1.00[ASN][1000 genomes]
rs6965937	1.00[ASN][1000 genomes]
rs73263804	1.00[AMR][1000 genomes]
rs73263827	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266009	1.00[AMR][1000 genomes]
rs73266027	1.00[AMR][1000 genomes]
rs73266073	1.00[AMR][1000 genomes]
rs73280507	1.00[AMR][1000 genomes]
rs73280515	1.00[AMR][1000 genomes]
rs73280517	1.00[AMR][1000 genomes]
rs73280547	1.00[AMR][1000 genomes]
rs73280568	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030645	chr7:14015533-14078153	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538739	chr7:14015533-14078153	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14070600-14071200	Enhancers	Fetal Intestine Large	intestine
2	chr7:14070800-14071800	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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