Variant report
| Variant | rs61101223 |
|---|---|
| Chromosome Location | chr7:14090152-14090153 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:14028438..14030730-chr7:14088561..14090365,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000006468 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs60347772 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60770951 | 1.00[AMR][1000 genomes] |
| rs60969539 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73263804 | 1.00[AMR][1000 genomes] |
| rs73263827 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73266009 | 1.00[AMR][1000 genomes] |
| rs73266027 | 1.00[AMR][1000 genomes] |
| rs73266073 | 1.00[AMR][1000 genomes] |
| rs73280507 | 1.00[AMR][1000 genomes] |
| rs73280515 | 1.00[AMR][1000 genomes] |
| rs73280517 | 1.00[AMR][1000 genomes] |
| rs73280547 | 1.00[AMR][1000 genomes] |
| rs73280568 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019873 | chr7:13707148-14133367 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv949467 | chr7:13938464-14279074 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
