Variant report
Variant | rs604767 |
---|---|
Chromosome Location | chr11:85789983-85789984 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:85785404..85787947-chr11:85789787..85792385,3 | K562 | blood: | |
2 | chr11:85780388..85781944-chr11:85788305..85790883,2 | MCF-7 | breast: | |
3 | chr11:85779288..85783176-chr11:85789700..85791759,3 | K562 | blood: | |
4 | chr11:85780484..85782378-chr11:85788845..85790853,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000073921 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1214669 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12808312 | 0.87[EUR][1000 genomes] |
rs1513390 | 0.89[AFR][1000 genomes] |
rs1949221 | 0.89[EUR][1000 genomes] |
rs2508381 | 0.85[EUR][1000 genomes] |
rs2508690 | 0.84[EUR][1000 genomes] |
rs2508692 | 0.89[CEU][hapmap];0.88[EUR][1000 genomes] |
rs2508693 | 0.84[EUR][1000 genomes] |
rs2508697 | 0.88[EUR][1000 genomes] |
rs3016240 | 0.85[EUR][1000 genomes] |
rs3016786 | 0.88[CEU][hapmap];0.91[EUR][1000 genomes] |
rs475639 | 0.96[CEU][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes] |
rs480781 | 0.90[ASN][1000 genomes] |
rs484154 | 0.89[CEU][hapmap];0.84[EUR][1000 genomes] |
rs501505 | 0.85[EUR][1000 genomes] |
rs519778 | 0.90[EUR][1000 genomes] |
rs529904 | 0.83[EUR][1000 genomes] |
rs532470 | 0.89[CEU][hapmap];0.82[EUR][1000 genomes] |
rs535590 | 0.91[ASN][1000 genomes] |
rs536841 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
rs541458 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes] |
rs541674 | 0.89[EUR][1000 genomes] |
rs545592 | 0.88[CEU][hapmap];0.90[EUR][1000 genomes] |
rs553141 | 0.85[EUR][1000 genomes] |
rs561655 | 0.91[JPT][hapmap];0.83[ASN][1000 genomes] |
rs563773 | 0.84[EUR][1000 genomes] |
rs565031 | 0.87[EUR][1000 genomes] |
rs565719 | 0.94[ASN][1000 genomes] |
rs572979 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs579406 | 0.80[EUR][1000 genomes] |
rs583126 | 0.83[AFR][1000 genomes] |
rs597446 | 0.92[YRI][hapmap];0.89[AFR][1000 genomes] |
rs613222 | 0.93[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs618001 | 0.92[YRI][hapmap];0.82[AFR][1000 genomes] |
rs631639 | 0.83[ASN][1000 genomes] |
rs636772 | 0.80[EUR][1000 genomes] |
rs638509 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
rs647422 | 0.89[EUR][1000 genomes] |
rs652165 | 0.96[ASN][1000 genomes] |
rs666682 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
rs671686 | 0.83[EUR][1000 genomes] |
rs683494 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1050948 | chr11:85756325-85968665 | Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
2 | nsv541117 | chr11:85756325-85968665 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:85781400-85796000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr11:85789800-85790200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |