Variant report

Variant	rs480781
Chromosome Location	chr11:85795950-85795951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1973630	0.84[EUR][1000 genomes]
rs2458493	0.80[AFR][1000 genomes]
rs2458500	0.85[AFR][1000 genomes]
rs2508691	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2508696	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2509609	0.85[AFR][1000 genomes]
rs489486	0.80[AFR][1000 genomes]
rs493254	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs519961	0.83[AFR][1000 genomes]
rs535590	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs536841	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs541458	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs543293	0.85[AFR][1000 genomes]
rs561646	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs561655	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs565719	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs585820	0.80[AFR][1000 genomes]
rs586274	0.85[AFR][1000 genomes]
rs587038	0.80[EUR][1000 genomes]
rs602222	0.82[EUR][1000 genomes]
rs604767	0.90[ASN][1000 genomes]
rs609903	0.83[EUR][1000 genomes]
rs631639	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs635168	0.85[AFR][1000 genomes]
rs636355	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs638509	0.89[ASN][1000 genomes]
rs639012	0.84[EUR][1000 genomes]
rs645293	0.85[AFR][1000 genomes]
rs645299	0.81[EUR][1000 genomes]
rs652165	0.90[ASN][1000 genomes]
rs659863	0.82[EUR][1000 genomes]
rs669813	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs676733	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs677869	0.82[EUR][1000 genomes]
rs677909	0.85[EUR][1000 genomes]
rs682928	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs694011	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs867611	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85781400-85796000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:85791600-85801200	Weak transcription	Pancreas	Pancrea

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