Variant report

Variant	rs519961
Chromosome Location	chr11:85832424-85832425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85827592..85829665-chr11:85832093..85833699,2	K562	blood:
2	chr11:85828354..85830136-chr11:85831777..85833515,2	K562	blood:
3	chr11:85831470..85833908-chr11:85842625..85844775,2	K562	blood:
4	chr11:85831885..85834188-chr11:85840197..85842811,2	K562	blood:
5	chr11:85750532..85752691-chr11:85830646..85833221,2	K562	blood:
6	chr11:85830159..85832841-chr11:85834034..85836682,5	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10751134	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10792830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10792831	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10792832	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs10898438	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10898439	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1237999	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1898895	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2458493	0.86[CHB][hapmap];0.83[YRI][hapmap]
rs2458496	0.83[YRI][hapmap]
rs2458500	0.82[CHB][hapmap];0.83[YRI][hapmap]
rs2508692	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2509608	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs2888903	0.81[ASN][1000 genomes]
rs3016786	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3851178	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3851179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs3915642	0.80[ASN][1000 genomes]
rs471470	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs472486	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs474479	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs475639	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs480781	0.83[AFR][1000 genomes]
rs484154	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs489486	0.82[CHB][hapmap]
rs493254	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4944560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs497816	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs526904	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs527162	0.82[YRI][hapmap]
rs532470	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs536841	0.82[YRI][hapmap]
rs542126	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs543293	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs545592	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs561646	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs566975	0.89[ASN][1000 genomes]
rs572979	0.81[ASN][1000 genomes]
rs573167	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs580887	0.94[ASN][1000 genomes]
rs583162	0.90[ASN][1000 genomes]
rs586274	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs592297	0.82[YRI][hapmap]
rs597446	0.82[CHB][hapmap]
rs600743	0.83[YRI][hapmap]
rs602222	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs613222	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs618001	0.82[CHB][hapmap]
rs629343	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs631611	0.94[ASN][1000 genomes]
rs634719	0.82[CHB][hapmap]
rs637304	0.83[YRI][hapmap]
rs645293	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs645299	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs666682	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs669556	0.82[CHB][hapmap]
rs669813	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs676733	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs677909	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs682928	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs683494	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs694011	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7110631	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7114331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7114401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7129687	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7941541	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs867611	0.89[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85827400-85832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:85828000-85834200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:85829400-85834200	Weak transcription	A549	lung
5	chr11:85829800-85834000	Weak transcription	K562	blood
6	chr11:85830600-85833200	Weak transcription	Brain Anterior Caudate	brain
7	chr11:85830600-85833600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:85830600-85836800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:85831000-85832800	Enhancers	Fetal Intestine Large	intestine
10	chr11:85831800-85832800	Enhancers	Fetal Intestine Small	intestine
11	chr11:85831800-85832800	Enhancers	HepG2	liver
12	chr11:85832200-85832600	Enhancers	Liver	Liver
13	chr11:85832400-85832600	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:85832400-85832800	Enhancers	Fetal Kidney	kidney
15	chr11:85832400-85832800	Weak transcription	Placenta	Placenta

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