Variant report

Variant	rs1898895
Chromosome Location	chr11:85837669-85837670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85829897..85832086-chr11:85836791..85838653,2	K562	blood:
2	chr11:85659346..85662146-chr11:85836762..85839271,2	K562	blood:
3	chr11:85835506..85837110-chr11:85837599..85840218,2	K562	blood:
4	chr11:85836520..85838381-chr11:85894260..85896246,2	K562	blood:
5	chr11:85827002..85832130-chr11:85832527..85838500,7	MCF-7	breast:
6	chr11:85837219..85838981-chr11:85844056..85845625,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10751134	0.95[JPT][hapmap]
rs10792830	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10792831	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10792832	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10898438	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10898439	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2458493	0.82[CHB][hapmap]
rs2508692	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3016786	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3851178	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3851179	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs475639	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs484154	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs493254	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4944560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs497816	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs526904	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs532470	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs542126	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs545592	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs561646	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs602222	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs613222	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs629343	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs645299	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs666682	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs669813	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs676733	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs677909	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs682928	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs683494	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs694011	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7114331	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7114401	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7129687	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7941541	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs867611	0.89[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85832800-85838200	Enhancers	Placenta	Placenta
2	chr11:85835600-85837800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:85835600-85838600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:85835800-85845600	Weak transcription	Brain Anterior Caudate	brain
5	chr11:85836200-85838000	Weak transcription	HepG2	liver
6	chr11:85836200-85839600	Weak transcription	K562	blood
7	chr11:85836800-85839200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:85837000-85839000	Enhancers	Brain Hippocampus Middle	brain
9	chr11:85837200-85838000	Weak transcription	Brain Substantia Nigra	brain
10	chr11:85837200-85839200	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:85837400-85838200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:85837600-85838200	Enhancers	Ovary	ovary
13	chr11:85837600-85839000	Enhancers	Brain Angular Gyrus	brain

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