Variant report

Variant	rs4944560
Chromosome Location	chr11:85845045-85845046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85834004..85837097-chr11:85843362..85846409,3	K562	blood:
2	chr11:85843188..85845869-chr11:85853457..85855853,3	K562	blood:
3	chr11:85844122..85845739-chr11:85912791..85915095,2	K562	blood:
4	chr11:85839162..85840791-chr11:85844170..85846014,2	MCF-7	breast:
5	chr11:85843188..85847457-chr11:85851977..85855853,7	K562	blood:
6	chr11:85844022..85845904-chr11:85847037..85849621,3	K562	blood:
7	chr11:85837219..85838981-chr11:85844056..85845625,2	K562	blood:
8	chr11:85778747..85782250-chr11:85844102..85847202,4	K562	blood:
9	chr11:85844772..85849892-chr11:85856973..85861809,6	K562	blood:
10	chr11:85808677..85810981-chr11:85843270..85845709,2	K562	blood:
11	chr11:85834930..85836499-chr11:85844067..85846409,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10751134	0.82[CEU][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs10792830	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.86[ASN][1000 genomes]
rs10792831	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10792832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10898438	0.85[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898439	0.85[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898440	0.86[ASN][1000 genomes]
rs11234555	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11234556	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1898895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2028338	0.88[ASN][1000 genomes]
rs2458493	0.82[CHB][hapmap]
rs2508692	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2888903	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3016786	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3844143	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3851178	0.85[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3851179	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3915642	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs471470	0.86[ASN][1000 genomes]
rs472486	0.82[ASN][1000 genomes]
rs474479	0.85[ASN][1000 genomes]
rs475639	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs484154	0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs493254	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs497816	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs519961	0.87[ASN][1000 genomes]
rs526904	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs532470	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs542126	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs543293	0.81[ASN][1000 genomes]
rs545592	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs561646	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs573167	0.86[ASN][1000 genomes]
rs580887	0.82[ASN][1000 genomes]
rs586274	0.82[ASN][1000 genomes]
rs602222	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs613222	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs629343	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs631611	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs645293	0.82[ASN][1000 genomes]
rs645299	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs666682	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs669813	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs676733	0.86[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs677909	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs682928	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs683494	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs694011	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7110631	0.93[ASN][1000 genomes]
rs7114331	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[ASN][1000 genomes]
rs7114401	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7129687	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7941541	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7952506	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs867611	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9787874	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85835800-85845600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:85838200-85846800	Weak transcription	Placenta	Placenta
3	chr11:85839000-85845600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:85840000-85845600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:85840000-85847200	Weak transcription	Ovary	ovary
6	chr11:85843200-85845200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:85843600-85845200	Enhancers	K562	blood
8	chr11:85843600-85848200	Enhancers	Fetal Intestine Large	intestine
9	chr11:85843800-85845600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:85843800-85846800	Enhancers	HepG2	liver
11	chr11:85843800-85848200	Enhancers	Fetal Intestine Small	intestine
12	chr11:85844200-85845600	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:85844400-85846600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:85844600-85845200	Enhancers	Fetal Kidney	kidney
15	chr11:85844800-85845600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr11:85845000-85845400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:85845000-85845600	Enhancers	Brain Substantia Nigra	brain
18	chr11:85845000-85846200	Weak transcription	Small Intestine	intestine
19	chr11:85845000-85847600	Enhancers	Brain Inferior Temporal Lobe	brain

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