Variant report

Variant	rs7110631
Chromosome Location	chr11:85856187-85856188
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85855764..85858866-chr11:85871267..85874151,3	K562	blood:
2	chr11:85853396..85856264-chr11:85887002..85888744,3	K562	blood:
3	chr11:85854757..85856923-chr11:85869692..85871194,2	K562	blood:
4	chr11:85777613..85779619-chr11:85854927..85856671,2	K562	blood:
5	chr11:85852725..85854278-chr11:85855856..85858285,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10751134	0.87[ASW][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.85[YRI][hapmap]
rs10792830	0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10792831	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792832	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898438	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10898439	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10898440	0.92[ASN][1000 genomes]
rs11234555	0.90[ASN][1000 genomes]
rs11234556	0.92[ASN][1000 genomes]
rs1898895	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2028338	0.85[ASN][1000 genomes]
rs2508692	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2509608	0.82[YRI][hapmap]
rs2888903	0.94[ASN][1000 genomes]
rs3016786	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3844143	0.92[ASN][1000 genomes]
rs3851178	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3851179	0.87[ASW][hapmap];0.81[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3915642	0.93[ASN][1000 genomes]
rs471470	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs472486	0.80[ASN][1000 genomes]
rs474479	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs475639	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs484154	0.81[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs493254	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4944560	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs497816	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs519961	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs526904	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs527162	1.00[ASW][hapmap]
rs532470	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs536841	0.86[ASW][hapmap];0.83[MEX][hapmap]
rs542126	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs543293	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs545592	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs561646	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs561655	0.91[MEX][hapmap];0.88[TSI][hapmap]
rs573167	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs580887	0.80[ASN][1000 genomes]
rs586274	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs592297	1.00[ASW][hapmap]
rs602222	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs613222	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs629343	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs631611	0.80[ASN][1000 genomes]
rs645293	0.81[ASN][1000 genomes]
rs645299	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs666682	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs669813	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs676733	0.87[ASW][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs677909	1.00[ASW][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs682928	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs683494	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs694011	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs7114331	0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7114401	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7129687	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7941541	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7952506	0.88[ASN][1000 genomes]
rs867611	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9787874	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85845200-85858600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:85845800-85859800	Weak transcription	Aorta	Aorta
3	chr11:85846400-85862200	Weak transcription	Psoas Muscle	Psoas
4	chr11:85848000-85861200	Weak transcription	Small Intestine	intestine
5	chr11:85848000-85861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:85849000-85858600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:85849200-85857200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:85849400-85856200	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:85850400-85862600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:85850600-85856800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:85852600-85859200	Weak transcription	Brain Anterior Caudate	brain
12	chr11:85852800-85862200	Weak transcription	Right Atrium	heart
13	chr11:85853000-85856400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr11:85853200-85859800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:85853200-85860200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:85853200-85860600	Weak transcription	Osteobl	bone
17	chr11:85853800-85856600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr11:85854200-85856600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:85854400-85856200	Enhancers	Fetal Kidney	kidney
20	chr11:85854400-85856600	Enhancers	Fetal Lung	lung
21	chr11:85854400-85862800	Weak transcription	Primary B cells from cord blood	blood
22	chr11:85854600-85857400	Enhancers	Duodenum Mucosa	Duodenum
23	chr11:85854800-85856800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr11:85854800-85857000	Enhancers	Brain Substantia Nigra	brain
25	chr11:85854800-85857400	Enhancers	Fetal Intestine Small	intestine
26	chr11:85854800-85862600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:85855000-85856800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:85855000-85861800	Weak transcription	Adipose Nuclei	Adipose
29	chr11:85855000-85862000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:85855200-85858000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr11:85855400-85856200	Enhancers	Liver	Liver
32	chr11:85855400-85856600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr11:85855400-85856800	Enhancers	Brain Angular Gyrus	brain
34	chr11:85855400-85857000	Enhancers	Brain Hippocampus Middle	brain
35	chr11:85855400-85857200	Enhancers	Fetal Intestine Large	intestine
36	chr11:85855600-85856800	Enhancers	Brain Cingulate Gyrus	brain
37	chr11:85855600-85856800	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr11:85855600-85857000	Enhancers	Stomach Mucosa	stomach
39	chr11:85855600-85857800	Enhancers	K562	blood
40	chr11:85855800-85856200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:85855800-85856400	Enhancers	HepG2	liver
42	chr11:85855800-85857200	Enhancers	A549	lung
43	chr11:85855800-85862200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr11:85856000-85856800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:85856000-85861800	Weak transcription	GM12878-XiMat	blood

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