Variant report

Variant	rs645293
Chromosome Location	chr11:85809825-85809826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85808677..85810981-chr11:85843270..85845709,2	K562	blood:
2	chr11:85809081..85811132-chr11:85882355..85885096,2	K562	blood:
3	chr11:85778602..85782954-chr11:85809019..85814326,4	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10792830	0.86[ASN][1000 genomes]
rs10792832	0.81[ASN][1000 genomes]
rs1214669	0.80[ASN][1000 genomes]
rs1237999	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2458500	0.80[AFR][1000 genomes]
rs2509609	0.80[AFR][1000 genomes]
rs3851179	0.81[ASN][1000 genomes]
rs471470	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs472486	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs474479	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs480781	0.85[AFR][1000 genomes]
rs4944560	0.82[ASN][1000 genomes]
rs497816	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs519961	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs526904	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs542126	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs543293	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs566975	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs572979	0.86[ASN][1000 genomes]
rs573167	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs580887	0.91[ASN][1000 genomes]
rs583162	0.95[ASN][1000 genomes]
rs586274	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629343	0.95[ASN][1000 genomes]
rs631611	0.94[ASN][1000 genomes]
rs635168	0.80[AFR][1000 genomes]
rs659023	0.90[ASN][1000 genomes]
rs7110631	0.81[ASN][1000 genomes]
rs7114331	0.86[ASN][1000 genomes]
rs7114401	0.90[ASN][1000 genomes]
rs7941541	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85803400-85810800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:85804400-85811000	Weak transcription	Osteobl	bone
3	chr11:85809600-85811000	Weak transcription	K562	blood

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