Variant report

Variant	rs472486
Chromosome Location	chr11:85831690-85831691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85829897..85832086-chr11:85836791..85838653,2	K562	blood:
2	chr11:85831470..85833908-chr11:85842625..85844775,2	K562	blood:
3	chr11:85750532..85752691-chr11:85830646..85833221,2	K562	blood:
4	chr11:85827002..85832130-chr11:85832527..85838500,7	MCF-7	breast:
5	chr11:85830159..85832841-chr11:85834034..85836682,5	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10751134	0.95[JPT][hapmap]
rs10792830	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10792831	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10792832	0.96[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10898438	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10898439	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10898440	0.83[ASN][1000 genomes]
rs11234556	0.83[ASN][1000 genomes]
rs1214669	0.81[ASN][1000 genomes]
rs1237999	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1898895	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2508692	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3016786	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3844143	0.82[ASN][1000 genomes]
rs3851178	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3851179	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs471470	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs474479	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs475639	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs484154	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs493254	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4944560	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs497816	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs519961	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs526904	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs532470	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs542126	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs543293	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs545592	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs561646	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs561655	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs566975	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs572979	0.86[ASN][1000 genomes]
rs573167	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs580887	1.00[ASN][1000 genomes]
rs583162	0.96[ASN][1000 genomes]
rs586274	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs602222	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs613222	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs629343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs631611	0.90[ASN][1000 genomes]
rs645293	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs645299	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs666682	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs669813	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs676733	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs677909	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs682928	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs683494	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs694011	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7110631	0.80[ASN][1000 genomes]
rs7114331	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7114401	0.96[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7129687	0.96[CHB][hapmap];0.86[JPT][hapmap]
rs7941541	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs867611	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9787874	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85827400-85832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:85828000-85834200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:85828600-85832200	Weak transcription	Placenta	Placenta
5	chr11:85829200-85832400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:85829400-85834200	Weak transcription	A549	lung
7	chr11:85829600-85831800	Weak transcription	Fetal Intestine Small	intestine
8	chr11:85829600-85831800	Weak transcription	HepG2	liver
9	chr11:85829800-85834000	Weak transcription	K562	blood
10	chr11:85830600-85833200	Weak transcription	Brain Anterior Caudate	brain
11	chr11:85830600-85833600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:85830600-85836800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:85831000-85832800	Enhancers	Fetal Intestine Large	intestine
14	chr11:85831600-85831800	Enhancers	Liver	Liver
15	chr11:85831600-85832400	Weak transcription	Fetal Kidney	kidney

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