Variant report

Variant	rs11234556
Chromosome Location	chr11:85849411-85849412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85848367..85849977-chr11:85884003..85885700,2	K562	blood:
2	chr11:85844022..85845904-chr11:85847037..85849621,3	K562	blood:
3	chr11:85810855..85813680-chr11:85847452..85850001,2	K562	blood:
4	chr11:85848837..85850874-chr17:80769880..80771461,2	MCF-7	breast:
5	chr11:85844772..85849892-chr11:85856973..85861809,6	K562	blood:
6	chr11:85846668..85849486-chr11:85860309..85862549,2	K562	blood:
7	chr11:85840328..85842896-chr11:85848812..85850982,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10792830	0.88[ASN][1000 genomes]
rs10792831	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792832	0.88[ASN][1000 genomes]
rs10898438	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898439	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898440	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11234555	0.89[ASN][1000 genomes]
rs2028338	0.92[ASN][1000 genomes]
rs2888903	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3844143	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851178	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3851179	0.88[ASN][1000 genomes]
rs3915642	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs472486	0.83[ASN][1000 genomes]
rs4944560	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs580887	0.83[ASN][1000 genomes]
rs7110631	0.92[ASN][1000 genomes]
rs7114331	0.88[ASN][1000 genomes]
rs7114401	0.84[ASN][1000 genomes]
rs7941541	0.91[ASN][1000 genomes]
rs7952506	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9787874	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85845200-85858600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:85845800-85859800	Weak transcription	Aorta	Aorta
3	chr11:85846000-85851600	Weak transcription	Right Atrium	heart
4	chr11:85846400-85849800	Weak transcription	Liver	Liver
5	chr11:85846400-85851600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:85846400-85862200	Weak transcription	Psoas Muscle	Psoas
7	chr11:85847400-85855600	Weak transcription	Stomach Mucosa	stomach
8	chr11:85848000-85849600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:85848000-85849800	Weak transcription	Adipose Nuclei	Adipose
10	chr11:85848000-85849800	Weak transcription	Osteobl	bone
11	chr11:85848000-85851400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:85848000-85851400	Weak transcription	Brain Anterior Caudate	brain
13	chr11:85848000-85851400	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:85848000-85851400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:85848000-85851400	Weak transcription	Brain Substantia Nigra	brain
16	chr11:85848000-85851600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:85848000-85852600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:85848000-85861200	Weak transcription	Small Intestine	intestine
19	chr11:85848000-85861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:85848200-85849800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:85848200-85849800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:85848200-85849800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr11:85848200-85854400	Weak transcription	Fetal Intestine Large	intestine
24	chr11:85848600-85849800	Weak transcription	K562	blood
25	chr11:85849000-85849800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:85849000-85858600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:85849200-85850000	Enhancers	Primary T cells from cord blood	blood
28	chr11:85849200-85856000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr11:85849200-85857200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:85849400-85849800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:85849400-85849800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:85849400-85849800	Enhancers	GM12878-XiMat	blood
33	chr11:85849400-85850200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr11:85849400-85851400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:85849400-85852400	Enhancers	Placenta	Placenta
36	chr11:85849400-85852600	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr11:85849400-85853800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr11:85849400-85854400	Enhancers	Primary B cells from cord blood	blood
39	chr11:85849400-85856200	Enhancers	Primary hematopoietic stem cells	blood

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