Variant report

Variant	rs9787874
Chromosome Location	chr11:85860305-85860306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr11:85860183-85860535	K562	blood:	n/a	n/a
2	ZBTB7A	chr11:85860103-85860313	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85778968..85782907-chr11:85858162..85860822,3	K562	blood:
2	chr11:85859696..85863993-chr11:85872249..85875647,5	K562	blood:
3	chr11:85860013..85862994-chr11:85864825..85867094,3	MCF-7	breast:
4	chr11:85859821..85862459-chr11:85922097..85923862,2	K562	blood:
5	chr11:85844772..85849892-chr11:85856973..85861809,6	K562	blood:
6	chr11:85858516..85861097-chr11:85882162..85885113,2	K562	blood:
7	chr11:85779554..85782905-chr11:85860304..85865248,6	K562	blood:

No data

Variant related genes	Relation type
RNU6-560P	TF binding region
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10792830	0.87[ASN][1000 genomes]
rs10792831	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792832	0.90[ASN][1000 genomes]
rs10898438	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898439	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898440	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234555	0.83[ASN][1000 genomes]
rs11234556	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2028338	0.87[ASN][1000 genomes]
rs2888903	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3844143	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3851178	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3851179	0.90[ASN][1000 genomes]
rs3915642	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs472486	0.83[ASN][1000 genomes]
rs4944560	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs580887	0.83[ASN][1000 genomes]
rs7110631	0.92[ASN][1000 genomes]
rs7114331	0.88[ASN][1000 genomes]
rs7114401	0.83[ASN][1000 genomes]
rs7129687	0.82[ASN][1000 genomes]
rs7941541	0.92[ASN][1000 genomes]
rs7952506	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85846400-85862200	Weak transcription	Psoas Muscle	Psoas
2	chr11:85848000-85861200	Weak transcription	Small Intestine	intestine
3	chr11:85848000-85861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:85850400-85862600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:85852800-85862200	Weak transcription	Right Atrium	heart
6	chr11:85853200-85860600	Weak transcription	Osteobl	bone
7	chr11:85854400-85862800	Weak transcription	Primary B cells from cord blood	blood
8	chr11:85854800-85862600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:85855000-85861800	Weak transcription	Adipose Nuclei	Adipose
10	chr11:85855000-85862000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:85855800-85862200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:85856000-85861800	Weak transcription	GM12878-XiMat	blood
13	chr11:85856200-85862200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:85856600-85861200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:85856600-85862000	Weak transcription	Fetal Kidney	kidney
16	chr11:85857000-85863600	Weak transcription	Stomach Mucosa	stomach
17	chr11:85857200-85861200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:85857200-85861200	Weak transcription	Fetal Intestine Large	intestine
19	chr11:85857200-85862200	Weak transcription	A549	lung
20	chr11:85857400-85861400	Weak transcription	Liver	Liver
21	chr11:85857400-85861800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:85858000-85862200	Enhancers	Brain Hippocampus Middle	brain
23	chr11:85858200-85860600	Enhancers	Ovary	ovary
24	chr11:85858200-85862400	Enhancers	Brain Cingulate Gyrus	brain
25	chr11:85858400-85861200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:85858400-85861200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:85858400-85861200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:85858400-85862000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:85858400-85862200	Weak transcription	Pancreas	Pancrea
30	chr11:85858400-85862400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr11:85858600-85861200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr11:85858600-85861800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:85859200-85860400	Enhancers	Brain Angular Gyrus	brain
34	chr11:85859200-85860600	Enhancers	Brain Anterior Caudate	brain
35	chr11:85859200-85861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:85859200-85861200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:85859200-85861600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:85859400-85860600	Enhancers	Fetal Lung	lung
39	chr11:85859400-85861200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:85859400-85861200	Weak transcription	HMEC	breast
41	chr11:85859600-85860400	Enhancers	Fetal Stomach	stomach
42	chr11:85859800-85860400	Enhancers	Aorta	Aorta
43	chr11:85859800-85860400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr11:85859800-85861200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:85859800-85861200	Weak transcription	Hela-S3	cervix
46	chr11:85859800-85862000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:85859800-85862000	Weak transcription	Fetal Intestine Small	intestine
48	chr11:85859800-85862200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr11:85859800-85862400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:85860000-85860600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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