Variant report

Variant	rs10792832
Chromosome Location	chr11:85867875-85867876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85867474..85869352-chr11:85956593..85958446,2	K562	blood:
2	chr11:85867086..85869713-chr11:85872551..85875438,3	K562	blood:
3	chr11:85778606..85781655-chr11:85865896..85868679,3	K562	blood:
4	chr11:85867784..85870379-chr11:85900612..85902455,2	K562	blood:
5	chr11:85862649..85865234-chr11:85865987..85868104,3	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction
ENSG00000200877	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10751134	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10792830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10792831	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10898438	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10898439	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10898440	0.90[ASN][1000 genomes]
rs11234555	0.86[ASN][1000 genomes]
rs11234556	0.88[ASN][1000 genomes]
rs1898895	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2028338	0.83[ASN][1000 genomes]
rs2458493	0.83[CHB][hapmap];0.83[YRI][hapmap]
rs2458496	0.83[YRI][hapmap]
rs2458500	0.83[YRI][hapmap]
rs2508692	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2508696	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2509608	1.00[YRI][hapmap]
rs2888903	0.90[ASN][1000 genomes]
rs3016786	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3844143	0.88[ASN][1000 genomes]
rs3851178	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3851179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3915642	0.90[ASN][1000 genomes]
rs471470	0.85[ASN][1000 genomes]
rs472486	0.80[ASN][1000 genomes]
rs474479	0.84[ASN][1000 genomes]
rs475639	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs484154	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs493254	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs4944560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs497816	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs519961	0.86[ASN][1000 genomes]
rs526904	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs527162	0.82[YRI][hapmap]
rs532470	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs536841	0.82[YRI][hapmap]
rs542126	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs545592	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs561646	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs573167	0.85[ASN][1000 genomes]
rs580887	0.80[ASN][1000 genomes]
rs586274	0.81[ASN][1000 genomes]
rs592297	0.82[YRI][hapmap]
rs600743	0.83[YRI][hapmap]
rs602222	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs609903	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs613222	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs629343	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs631611	0.80[ASN][1000 genomes]
rs637304	0.83[YRI][hapmap]
rs645293	0.81[ASN][1000 genomes]
rs645299	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs659023	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs666682	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs669813	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap]
rs676733	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs677909	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs682928	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs683494	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs694011	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs7110631	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7114331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7114401	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7129687	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7941541	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7952506	0.85[ASN][1000 genomes]
rs867611	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9787874	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Alzheimer's disease (late onset)	24162737	GWAS catalog

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85863400-85870400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:85863400-85870600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:85863400-85872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:85863400-85873000	Weak transcription	Lung	lung
5	chr11:85863600-85869400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:85863600-85869600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:85863600-85871200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:85863800-85871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:85864000-85868800	Weak transcription	Hela-S3	cervix
10	chr11:85864200-85870400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:85864200-85870800	Weak transcription	HSMM	muscle
12	chr11:85864200-85871600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:85864200-85871600	Weak transcription	Brain Angular Gyrus	brain
14	chr11:85864200-85871600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:85864200-85872000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:85864400-85871600	Weak transcription	Brain Anterior Caudate	brain
17	chr11:85864600-85870200	Weak transcription	Brain Substantia Nigra	brain
18	chr11:85864600-85870600	Weak transcription	Fetal Lung	lung
19	chr11:85865200-85870600	Weak transcription	Fetal Intestine Large	intestine
20	chr11:85865200-85871000	Weak transcription	Small Intestine	intestine
21	chr11:85865200-85871200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:85865200-85872400	Weak transcription	Liver	Liver
23	chr11:85865400-85874400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:85865800-85868000	Enhancers	NHEK	skin
25	chr11:85866000-85868000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:85866000-85869600	Enhancers	K562	blood
27	chr11:85866400-85870200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:85866400-85874200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr11:85866600-85873000	Weak transcription	Gastric	stomach
30	chr11:85867000-85870000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:85867200-85868200	Enhancers	Fetal Stomach	stomach
32	chr11:85867200-85870000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr11:85867400-85868000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:85867400-85868000	Enhancers	Primary hematopoietic stem cells	blood
35	chr11:85867400-85868000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:85867400-85868200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:85867400-85868200	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:85867400-85875800	Enhancers	Placenta	Placenta
39	chr11:85867600-85868000	Enhancers	Primary B cells from peripheral blood	blood
40	chr11:85867600-85869800	Weak transcription	Fetal Thymus	thymus
41	chr11:85867600-85871000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:85867800-85868800	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:85867800-85869000	Weak transcription	Spleen	Spleen
44	chr11:85867800-85869200	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr11:85867800-85870200	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr11:85867800-85870400	Weak transcription	Right Atrium	heart
47	chr11:85867800-85870600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:85867800-85870600	Weak transcription	Ovary	ovary
49	chr11:85867800-85870800	Weak transcription	HMEC	breast
50	chr11:85867800-85871800	Weak transcription	Adipose Nuclei	Adipose

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