Variant report

Variant	rs7941541
Chromosome Location	chr11:85858538-85858539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85855764..85858866-chr11:85871267..85874151,3	K562	blood:
2	chr11:85780234..85781784-chr11:85857850..85859662,2	K562	blood:
3	chr11:85778968..85782907-chr11:85858162..85860822,3	K562	blood:
4	chr11:85856529..85858866-chr11:85871267..85874151,2	K562	blood:
5	chr11:85844772..85849892-chr11:85856973..85861809,6	K562	blood:
6	chr11:85856625..85859004-chr11:85876642..85878887,2	K562	blood:
7	chr11:85856566..85859537-chr11:85951959..85954165,2	K562	blood:
8	chr11:85858516..85861097-chr11:85882162..85885113,2	K562	blood:
9	chr11:85857814..85859738-chr11:85892040..85894023,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10751134	0.87[ASW][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs10792830	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10792831	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792832	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898438	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10898439	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10898440	0.92[ASN][1000 genomes]
rs11234555	0.90[ASN][1000 genomes]
rs11234556	0.91[ASN][1000 genomes]
rs1898895	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2028338	0.84[ASN][1000 genomes]
rs2458493	0.82[YRI][hapmap]
rs2458496	0.82[YRI][hapmap]
rs2458500	0.82[YRI][hapmap]
rs2508692	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2509608	1.00[YRI][hapmap]
rs2888903	0.94[ASN][1000 genomes]
rs3016786	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3844143	0.92[ASN][1000 genomes]
rs3851178	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3851179	0.87[ASW][hapmap];0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3915642	0.92[ASN][1000 genomes]
rs471470	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs474479	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs475639	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs484154	0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs493254	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4944560	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs497816	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs519961	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs526904	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs527162	1.00[ASW][hapmap];0.94[LWK][hapmap];0.82[YRI][hapmap]
rs532470	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs536841	0.86[ASW][hapmap];0.94[LWK][hapmap];0.82[YRI][hapmap]
rs542126	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs543293	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs545592	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs561646	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs561655	0.88[TSI][hapmap]
rs573167	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs586274	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs588076	0.89[LWK][hapmap]
rs592297	1.00[ASW][hapmap];0.94[LWK][hapmap];0.82[YRI][hapmap]
rs600743	0.82[YRI][hapmap]
rs602222	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs613222	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs629343	0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs637304	0.82[YRI][hapmap]
rs645293	0.80[ASN][1000 genomes]
rs645299	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.91[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap]
rs666682	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs669813	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs676733	0.87[ASW][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap]
rs677909	1.00[ASW][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs682928	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs683494	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs694011	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7110631	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7114331	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7114401	0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7129687	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7952506	0.87[ASN][1000 genomes]
rs867611	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9787874	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85845200-85858600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:85845800-85859800	Weak transcription	Aorta	Aorta
3	chr11:85846400-85862200	Weak transcription	Psoas Muscle	Psoas
4	chr11:85848000-85861200	Weak transcription	Small Intestine	intestine
5	chr11:85848000-85861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:85849000-85858600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:85850400-85862600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:85852600-85859200	Weak transcription	Brain Anterior Caudate	brain
9	chr11:85852800-85862200	Weak transcription	Right Atrium	heart
10	chr11:85853200-85859800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:85853200-85860200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:85853200-85860600	Weak transcription	Osteobl	bone
13	chr11:85854400-85862800	Weak transcription	Primary B cells from cord blood	blood
14	chr11:85854800-85862600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:85855000-85861800	Weak transcription	Adipose Nuclei	Adipose
16	chr11:85855000-85862000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:85855800-85862200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:85856000-85861800	Weak transcription	GM12878-XiMat	blood
19	chr11:85856200-85859600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:85856200-85862200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:85856600-85859400	Weak transcription	Fetal Lung	lung
22	chr11:85856600-85861200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:85856600-85862000	Weak transcription	Fetal Kidney	kidney
24	chr11:85856800-85859200	Weak transcription	Brain Angular Gyrus	brain
25	chr11:85857000-85863600	Weak transcription	Stomach Mucosa	stomach
26	chr11:85857200-85861200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:85857200-85861200	Weak transcription	Fetal Intestine Large	intestine
28	chr11:85857200-85862200	Weak transcription	A549	lung
29	chr11:85857400-85861400	Weak transcription	Liver	Liver
30	chr11:85857400-85861800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:85857800-85859400	Enhancers	HMEC	breast
32	chr11:85857800-85860200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:85858000-85858600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:85858000-85858800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:85858000-85859400	Weak transcription	Fetal Intestine Small	intestine
36	chr11:85858000-85862200	Enhancers	Brain Hippocampus Middle	brain
37	chr11:85858200-85860200	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr11:85858200-85860600	Enhancers	Ovary	ovary
39	chr11:85858200-85862400	Enhancers	Brain Cingulate Gyrus	brain
40	chr11:85858400-85858800	Weak transcription	Brain Substantia Nigra	brain
41	chr11:85858400-85859000	Enhancers	K562	blood
42	chr11:85858400-85861200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:85858400-85861200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:85858400-85861200	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr11:85858400-85862000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:85858400-85862200	Weak transcription	Pancreas	Pancrea
47	chr11:85858400-85862400	Weak transcription	Primary B cells from peripheral blood	blood

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