Variant report

Variant	rs497816
Chromosome Location	chr11:85812210-85812211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85538884..85541590-chr11:85810993..85813631,2	MCF-7	breast:
2	chr11:85810855..85813680-chr11:85847452..85850001,2	K562	blood:
3	chr11:85778602..85782954-chr11:85809019..85814326,4	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10751134	0.95[JPT][hapmap]
rs10792830	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10792831	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10792832	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10898438	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10898439	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1214669	0.85[ASN][1000 genomes]
rs1237999	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1898895	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2508692	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3016786	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3851178	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3851179	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs471470	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs472486	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs474479	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475639	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs484154	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs493254	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4944560	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs519961	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs526904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs532470	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs542126	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs543293	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs545592	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs561646	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs561655	0.83[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs566975	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs572979	0.90[ASN][1000 genomes]
rs573167	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs580887	0.96[ASN][1000 genomes]
rs583162	1.00[ASN][1000 genomes]
rs586274	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs602222	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs613222	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs629343	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs631611	0.89[ASN][1000 genomes]
rs645293	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs645299	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs666682	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs669813	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs676733	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs677909	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs682928	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs683494	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs694011	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7114331	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7114401	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7129687	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs7941541	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs867611	0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85811200-85812400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:85811200-85812400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:85811200-85812600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:85811200-85812600	Weak transcription	NHLF	lung
5	chr11:85811400-85812400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:85811400-85812400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:85811400-85812400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:85811400-85812400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:85811400-85812400	Weak transcription	HMEC	breast
10	chr11:85811400-85812400	Weak transcription	NHDF-Ad	bronchial
11	chr11:85811400-85812400	Weak transcription	NHEK	skin
12	chr11:85811400-85813000	Weak transcription	HepG2	liver
13	chr11:85811400-85814800	Weak transcription	K562	blood
14	chr11:85812000-85812600	Enhancers	A549	lung
15	chr11:85812000-85813200	Enhancers	Hela-S3	cervix
16	chr11:85812000-85813400	Enhancers	NH-A	brain
17	chr11:85812000-85813800	Enhancers	Osteobl	bone
18	chr11:85812200-85813000	Enhancers	Liver	Liver
19	chr11:85812200-85813800	Enhancers	Muscle Satellite Cultured Cells	--

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