Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:85538884..85541590-chr11:85810993..85813631,2	MCF-7	breast:
2	chr11:85810855..85813680-chr11:85847452..85850001,2	K562	blood:
3	chr11:85778602..85782954-chr11:85809019..85814326,4	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10792830	0.90[ASN][1000 genomes]
rs1214669	0.84[ASN][1000 genomes]
rs1237999	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs471470	0.90[ASN][1000 genomes]
rs472486	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs474479	0.89[ASN][1000 genomes]
rs497816	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs519961	0.89[ASN][1000 genomes]
rs526904	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs542126	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs543293	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs561655	0.90[AFR][1000 genomes]
rs572979	0.89[ASN][1000 genomes]
rs573167	0.90[ASN][1000 genomes]
rs580887	0.94[ASN][1000 genomes]
rs583162	0.99[ASN][1000 genomes]
rs586274	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs629343	0.99[ASN][1000 genomes]
rs631611	0.88[ASN][1000 genomes]
rs645293	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs659023	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7114331	0.89[ASN][1000 genomes]
rs7114401	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85811200-85812200	Weak transcription	Liver	Liver
2	chr11:85811200-85812400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:85811200-85812400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:85811200-85812600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:85811200-85812600	Weak transcription	NHLF	lung
6	chr11:85811400-85812400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:85811400-85812400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:85811400-85812400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:85811400-85812400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:85811400-85812400	Weak transcription	HMEC	breast
11	chr11:85811400-85812400	Weak transcription	NHDF-Ad	bronchial
12	chr11:85811400-85812400	Weak transcription	NHEK	skin
13	chr11:85811400-85813000	Weak transcription	HepG2	liver
14	chr11:85811400-85814800	Weak transcription	K562	blood
15	chr11:85811600-85812000	Weak transcription	A549	lung
16	chr11:85811600-85812000	Weak transcription	Hela-S3	cervix
17	chr11:85811600-85812000	Weak transcription	NH-A	brain
18	chr11:85811600-85812000	Weak transcription	Osteobl	bone

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