Variant report

Variant	rs10792830
Chromosome Location	chr11:85838808-85838809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85659346..85662146-chr11:85836762..85839271,2	K562	blood:
2	chr11:85838507..85840387-chr11:86012806..86014558,2	K562	blood:
3	chr11:85838134..85840505-chr11:85845229..85848211,2	K562	blood:
4	chr11:85837959..85840215-chr11:86014707..86016987,2	K562	blood:
5	chr11:85835506..85837110-chr11:85837599..85840218,2	K562	blood:
6	chr11:85778368..85780171-chr11:85838108..85841104,2	K562	blood:
7	chr11:85837219..85838981-chr11:85844056..85845625,2	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction
ENSG00000149196	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10751134	0.95[JPT][hapmap]
rs10792831	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10792832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10898438	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10898439	0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10898440	0.87[ASN][1000 genomes]
rs11234556	0.88[ASN][1000 genomes]
rs1237999	0.91[ASN][1000 genomes]
rs1898895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2028338	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2458493	0.82[CHB][hapmap]
rs2508692	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3016786	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3844143	0.87[ASN][1000 genomes]
rs3851178	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3851179	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs471470	0.90[ASN][1000 genomes]
rs472486	0.95[ASN][1000 genomes]
rs474479	0.90[ASN][1000 genomes]
rs475639	0.86[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs484154	0.82[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs493254	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4944560	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.86[ASN][1000 genomes]
rs497816	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs519961	0.91[ASN][1000 genomes]
rs526904	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs532470	0.86[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs542126	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs543293	0.85[ASN][1000 genomes]
rs545592	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs561646	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs566975	0.90[ASN][1000 genomes]
rs572979	0.82[ASN][1000 genomes]
rs573167	0.90[ASN][1000 genomes]
rs580887	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs583162	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs586274	0.86[ASN][1000 genomes]
rs602222	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs613222	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs629343	0.95[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs631611	0.85[ASN][1000 genomes]
rs645293	0.86[ASN][1000 genomes]
rs645299	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs666682	0.86[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs669813	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs676733	0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs677909	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs682928	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs683494	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs694011	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7110631	0.85[ASN][1000 genomes]
rs7114331	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7114401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7129687	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7941541	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7952506	0.84[ASN][1000 genomes]
rs867611	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9787874	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Psychosis and Alzheimer's disease	22005930	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10792830	FAM181B	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85835800-85845600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:85836200-85839600	Weak transcription	K562	blood
3	chr11:85836800-85839200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:85837000-85839000	Enhancers	Brain Hippocampus Middle	brain
5	chr11:85837200-85839200	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:85837600-85839000	Enhancers	Brain Angular Gyrus	brain
7	chr11:85838200-85839200	Weak transcription	Ovary	ovary
8	chr11:85838200-85839400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:85838200-85839600	Weak transcription	Fetal Intestine Large	intestine
10	chr11:85838200-85839800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:85838200-85846800	Weak transcription	Placenta	Placenta
12	chr11:85838600-85839400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:85838600-85839600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:85838600-85843800	Weak transcription	HepG2	liver
15	chr11:85838800-85845000	Weak transcription	Brain Substantia Nigra	brain

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