Variant report
| Variant | rs631611 |
|---|---|
| Chromosome Location | chr11:85823324-85823325 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254699 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10792830 | 0.85[ASN][1000 genomes] |
| rs10792832 | 0.80[ASN][1000 genomes] |
| rs1237999 | 0.92[ASN][1000 genomes] |
| rs2888903 | 0.82[EUR][1000 genomes] |
| rs3851179 | 0.80[ASN][1000 genomes] |
| rs3915642 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs471470 | 0.95[ASN][1000 genomes] |
| rs472486 | 0.90[ASN][1000 genomes] |
| rs474479 | 0.94[ASN][1000 genomes] |
| rs4944560 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs497816 | 0.89[ASN][1000 genomes] |
| rs519961 | 0.94[ASN][1000 genomes] |
| rs526904 | 0.88[ASN][1000 genomes] |
| rs542126 | 0.89[ASN][1000 genomes] |
| rs543293 | 0.96[ASN][1000 genomes] |
| rs566975 | 0.88[ASN][1000 genomes] |
| rs573167 | 0.95[ASN][1000 genomes] |
| rs580887 | 0.86[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs583162 | 0.89[ASN][1000 genomes] |
| rs586274 | 0.94[ASN][1000 genomes] |
| rs629343 | 0.89[ASN][1000 genomes] |
| rs645293 | 0.94[ASN][1000 genomes] |
| rs659023 | 0.81[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7110631 | 0.80[ASN][1000 genomes] |
| rs7114331 | 0.85[ASN][1000 genomes] |
| rs7114401 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050948 | chr11:85756325-85968665 | Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv541117 | chr11:85756325-85968665 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 3 | esv3332891 | chr11:85819854-85823752 | Weak transcription Active TSS Flanking Active TSS Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:85813600-85826600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr11:85823200-85823600 | Active TSS | K562 | blood |
