Variant report

Variant	rs586274
Chromosome Location	chr11:85814486-85814487
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85812308..85815576-chr11:85816844..85820250,5	K562	blood:
2	chr11:85806231..85808267-chr11:85813007..85815031,2	K562	blood:
3	chr11:85813540..85816535-chr11:85952453..85954783,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10751134	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10792830	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10792831	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10792832	0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs10898438	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10898439	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1214669	0.80[ASN][1000 genomes]
rs1237999	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1898895	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2458493	0.83[YRI][hapmap]
rs2458496	0.83[YRI][hapmap]
rs2458500	0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs2508692	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2509608	1.00[YRI][hapmap]
rs2509609	0.80[AFR][1000 genomes]
rs3016786	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3851178	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3851179	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs471470	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs472486	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs474479	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs475639	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs480781	0.85[AFR][1000 genomes]
rs484154	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs493254	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4944560	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs497816	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs519961	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs526904	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs527162	0.82[YRI][hapmap]
rs532470	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs536841	0.82[YRI][hapmap]
rs542126	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs543293	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs545592	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs561646	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs561655	0.80[CEU][hapmap]
rs566975	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs572979	0.86[ASN][1000 genomes]
rs573167	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs580887	0.91[ASN][1000 genomes]
rs583162	0.95[ASN][1000 genomes]
rs592297	0.82[YRI][hapmap]
rs600743	0.83[YRI][hapmap]
rs602222	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs613222	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs629343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs631611	0.94[ASN][1000 genomes]
rs635168	0.80[AFR][1000 genomes]
rs637304	0.83[YRI][hapmap]
rs645293	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645299	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs666682	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs669813	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs676733	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs677909	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs682928	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs683494	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs694011	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7110631	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7114331	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7114401	0.96[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7129687	0.96[CHB][hapmap];0.86[JPT][hapmap]
rs7941541	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs867611	0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85811400-85814800	Weak transcription	K562	blood
2	chr11:85813400-85814600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:85813400-85814800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:85813400-85818200	Weak transcription	HSMM	muscle
5	chr11:85813400-85818200	Weak transcription	NH-A	brain
6	chr11:85813600-85818000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:85813600-85818200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:85813600-85826600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:85813800-85818000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:85813800-85818200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:85813800-85818200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:85813800-85818200	Weak transcription	Osteobl	bone
13	chr11:85814000-85815000	Weak transcription	Hela-S3	cervix

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