Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:85812308..85815576-chr11:85816844..85820250,5	K562	blood:
2	chr11:85806231..85808267-chr11:85813007..85815031,2	K562	blood:
3	chr11:85813540..85816535-chr11:85952453..85954783,2	K562	blood:
4	chr11:85778602..85782954-chr11:85809019..85814326,4	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10792830	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898438	0.81[ASN][1000 genomes]
rs1214669	0.85[ASN][1000 genomes]
rs1237999	0.97[ASN][1000 genomes]
rs3851178	0.81[ASN][1000 genomes]
rs471470	0.91[ASN][1000 genomes]
rs472486	0.96[ASN][1000 genomes]
rs474479	0.90[ASN][1000 genomes]
rs497816	1.00[ASN][1000 genomes]
rs519961	0.90[ASN][1000 genomes]
rs526904	0.99[ASN][1000 genomes]
rs542126	1.00[ASN][1000 genomes]
rs543293	0.91[ASN][1000 genomes]
rs566975	0.99[ASN][1000 genomes]
rs572979	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs573167	0.91[ASN][1000 genomes]
rs580887	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs586274	0.95[ASN][1000 genomes]
rs629343	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631611	0.89[ASN][1000 genomes]
rs645293	0.95[ASN][1000 genomes]
rs659023	0.94[ASN][1000 genomes]
rs7114331	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7114401	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85811400-85814800	Weak transcription	K562	blood
2	chr11:85813000-85814000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:85813400-85814600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:85813400-85814800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:85813400-85818200	Weak transcription	HSMM	muscle
6	chr11:85813400-85818200	Weak transcription	NH-A	brain
7	chr11:85813600-85814000	Enhancers	Liver	Liver
8	chr11:85813600-85814000	Enhancers	Hela-S3	cervix
9	chr11:85813600-85818000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:85813600-85818200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:85813600-85826600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:85813800-85818000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:85813800-85818200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:85813800-85818200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:85813800-85818200	Weak transcription	Osteobl	bone

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