Variant report

Variant	rs471470
Chromosome Location	chr11:85831541-85831542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85829897..85832086-chr11:85836791..85838653,2	K562	blood:
2	chr11:85831470..85833908-chr11:85842625..85844775,2	K562	blood:
3	chr11:85750532..85752691-chr11:85830646..85833221,2	K562	blood:
4	chr11:85827002..85832130-chr11:85832527..85838500,7	MCF-7	breast:
5	chr11:85830159..85832841-chr11:85834034..85836682,5	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10751134	0.95[JPT][hapmap];0.82[YRI][hapmap]
rs10792830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10792831	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10792832	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs10898438	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10898439	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1237999	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1898895	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2458493	0.81[CHB][hapmap]
rs2458500	0.81[CHB][hapmap]
rs2508692	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2508696	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2509608	0.80[CHB][hapmap]
rs2888903	0.80[ASN][1000 genomes]
rs3016786	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3851178	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3851179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs472486	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs474479	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs475639	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs484154	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs489486	0.81[CHB][hapmap]
rs493254	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4944560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs497816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs519961	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs526904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs532470	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs542126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs543293	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs545592	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs561646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs561655	0.81[CHB][hapmap]
rs566975	0.90[ASN][1000 genomes]
rs572979	0.82[ASN][1000 genomes]
rs573167	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580887	0.95[ASN][1000 genomes]
rs583162	0.91[ASN][1000 genomes]
rs586274	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs597446	0.80[CHB][hapmap]
rs602222	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs609903	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs613222	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs618001	0.80[CHB][hapmap]
rs629343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs631611	0.95[ASN][1000 genomes]
rs634719	0.81[CHB][hapmap]
rs645293	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs645299	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs659023	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs666682	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs669556	0.80[CHB][hapmap]
rs669813	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs676733	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs677909	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs682928	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs683494	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs694011	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7110631	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7113976	0.81[CHB][hapmap]
rs7114331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7114401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7129687	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7941541	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs867611	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85827400-85832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:85828000-85834200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:85828600-85832200	Weak transcription	Placenta	Placenta
5	chr11:85829200-85831600	Enhancers	Fetal Kidney	kidney
6	chr11:85829200-85832400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:85829400-85834200	Weak transcription	A549	lung
8	chr11:85829600-85831800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:85829600-85831800	Weak transcription	HepG2	liver
10	chr11:85829800-85834000	Weak transcription	K562	blood
11	chr11:85830000-85831600	Weak transcription	Liver	Liver
12	chr11:85830600-85833200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:85830600-85833600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:85830600-85836800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:85831000-85832800	Enhancers	Fetal Intestine Large	intestine

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